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Converting networks to predictive logic models from perturbation signalling data with CellNOpt2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Enio Gjerga, Panuwat Trairatphisan, Attila Gábor, Hermann Koch, Francesco Ceccarelli, Aurélien J. F. Dugourd, +2 more
4citations -
bRacatus : A method to estimate the accuracy and biogeographical status of georeferenced biological data2021 Methods in Ecology and Evolution article Environmental Science Species Distribution and Climate Change Open access
Eduardo Arlé, Alexander Zizka, Petr Keil, Marten Winter, Franz Essl, Tiffany M. Knight, +3 more
22citations -
SPARKI: a tool for the statistical analysis of pathogen identification results2025 Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Jacqueline Marcia Boccacino, Martin Del Castillo Velasco‐Herrera, Mathew A. Beale, Jamie Billington, Ian Vermes, Sofia Obolenski, +8 more
2citations -
Vigi4Eudra-score: Evaluation of the completeness of spontaneous adverse drug reaction reports in EudraVigilance2026 PLoS ONE article Pharmacology, Toxicology and Pharmaceutics Pharmacovigilance and Adverse Drug Reactions Open access
Patrick Christ, Diana Dubrall, Dennis Lex, Thomas Grüger, Matthias Schmid, Bernhardt Sachs
2citations -
CrossTalkeR: analysis and visualization of ligand–receptorne tworks2021 Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
James Shiniti Nagai, Nils B. Leimkühler, Michael T. Schaub, Rebekka K. Schneider, Ivan G. Costa
58citations -
StepMix: A Python Package for Pseudo-Likelihood Estimation of Generalized Mixture Models with External Variables2025 Journal of Statistical Software software-paper Computer Science Bayesian Methods and Mixture Models Open access
Sacha Morin, Robin Legault, Félix Laliberté, Zsuzsa Bakk, Charles‐Édouard Giguère, Roxane de la Sablonnière, +1 more
53citations -
CrossTalkeR: Analysis and Visualisation of Ligand Receptor Networks2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
James Shiniti Nagai, Nils B. Leimkühler, Michael T. Schaub, Rebekka K. Schneider, Ivan G. Costa
9citations -
A subgrid model for chemical enrichment in cosmological simulations2026 Monthly Notices of the Royal Astronomical Society article Physics and Astronomy Galaxies: Formation, Evolution, Phenomena Open access
Camila A. Correa, Joop Schaye, Matthieu Schaller, James W. Trayford, Evgenii Chaikin, Alejandro Benítez-Llambay, +3 more
9citations -
StepMix: A Python Package for Pseudo-Likelihood Estimation of Generalized Mixture Models with External Variables2023 arXiv (Cornell University) software-paper Computer Science Bayesian Methods and Mixture Models Open access
Sacha Morin, Robin Legault, Zsuzsa Bakk, Charles‐Édouard Giguère, Roxane de la Sablonnière, Éric Lacourse
8citations -
Plant PhysioSpace: a robust tool to compare stress response across plant species2021 PLANT PHYSIOLOGY article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Ali Hadizadeh Esfahani, Janina Maß, Asis Hallab, David Nevarez, Björn Usadel, Mark‐Christoph Ott, +2 more
7citations -
A system for independent evaluation of clinical prediction models while preserving intellectual property and data privacy2026 Zenodo (CERN European Organization for Nuclear Research) preprint Mathematics Statistical Methods in Epidemiology Open access
Joie Ensor, Ben Van Calster, Lasai Barreñada, Laure Wynants, Benjamin I. Perry
0citations -
A subgrid model for chemical enrichment in cosmological simulations2026 arXiv (Cornell University) preprint Physics and Astronomy Galaxies: Formation, Evolution, Phenomena Open access
Camila A. Correa, Joop Schaye, Matthieu Schaller, James W. Trayford, Evgenii Chaikin, Alejandro Benítez-Llambay, +3 more
0citations -
A subgrid model for chemical enrichment in cosmological simulations2026 arXiv (Cornell University) preprint Physics and Astronomy Galaxies: Formation, Evolution, Phenomena Open access
Camila A. Correa, Joop Schaye, Matthieu Schaller, James W. Trayford, Evgenii Chaikin, Alejandro Benítez-Llambay, +3 more
0citations