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Deformable hydrospheres and cell segmentation report on stresses generated by individual cells in tumoroids2026 Cell Reports Physical Science article Biochemistry, Genetics and Molecular Biology Cellular Mechanics and Interactions Open access
Rick Rodrigues de Mercado, Klara Beslmüller, Daan Vorselen, Erik H.J. Danen, Thomas Schmidt
4citations -
Neonatal liver niches program T cell tolerance2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology T-cell and B-cell Immunology Open access
Eva-Lena Stange, Trong-Hieu Nguyen, D. Borrero Mendoza, Aiara Lobo Gomes, Marlene Sophia Kohlhepp, Jonas Pes, +23 more
0citations -
Epigenetic Regulation of Skeletal Tissue Integrity and Osteoporosis Development2020 International Journal of Molecular Sciences article Biochemistry, Genetics and Molecular Biology Bone Metabolism and Diseases Open access
Yushan Chen, Wei‐Shiung Lian, Chung-Wen Kuo, Huei-Jing Ke, Pei-Chen Kuo, Holger Jahr, +1 more
19citations -
Cyto R-CNN and CytoNuke Dataset: Towards reliable whole-cell segmentation in bright-field histological images2024 Computer Methods and Programs in Biomedicine article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Johannes Raufeisen, Kunpeng Xie, Fabian Hörst, Till A. Braunschweig, Jianning Li, Jens Kleesiek, +6 more
11citations -
SCHNEL: scalable clustering of high dimensional single-cell data2020 Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tamim Abdelaal, Paul de Raadt, Boudewijn P. F. Lelieveldt, Marcel J. T. Reinders, Ahmed Essam Mahfouz
9citations -
SUMO2/3 modification of transcription-associated proteins controls cell viability in response to oxygen and glucose deprivation-mediated stress2025 Cell Death Discovery article Biochemistry, Genetics and Molecular Biology Ubiquitin and proteasome pathways Open access
Francisco Gallardo‐Chamizo, Román González‐Prieto, Vahid Jafari, Noelia Luna-Peláez, Alfred C.O. Vertegaal, Mario García‐Domínguez
9citations -
1381 Deciphering the role of immune cell communities in the initiation and progression of human colorectal cancer2024 Regular and Young Investigator Award Abstracts conference-abstract Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
S. Engels, Ana Marta Sequeira, Marieke E. Ijsselsteijn, Benedetta Manzato, Hao Dang, Jurjen J. Boonstra, +5 more
0citations -
Normal and abnormal development of the aortic valve and ascending aortic wall: a comprehensive overview of the embryology and pathology of the bicuspid aortic valve2022 Annals of Cardiothoracic Surgery article Medicine Aortic Disease and Treatment Approaches Open access
Nimrat Grewal, Adriana C. Gittenberger–de Groot, Jan H.N. Lindeman, Arthur Klautz, Antoine H.G. Driessen, Robert J.M. Klautz, +1 more
39citations -
Community-driven ELIXIR activities in single-cell omics2022 F1000Research article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Paulo Czarnewski, Ahmed Essam Mahfouz, Raffaele Calogero, Patricia M. Palagi, Laura Portell-Silva, Asier Gonzalez‐Uriarte, +21 more
11citations -
Identification of tumor antigens and anoikis-based molecular subtypes in the hepatocellular carcinoma immune microenvironment: implications for mRNA vaccine development and precision treatment2023 Journal Of Big Data article Medicine Hepatocellular Carcinoma Treatment and Prognosis Open access
Zhiyuan Zheng, Hantao Yang, Yang Mei Shi, Feng Zhou, Lingxiao Liu, Zhiping Yan, +1 more
3citations -
Peer Review Report For: Community-driven ELIXIR activities in single-cell omics [version 1; peer review: 2 approved with reservations]2023 peer-review Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Paulo Czarnewski, Ahmed Essam Mahfouz, Raffaele Calogero, Patricia M. Palagi, Laura Portell-Silva, Asier Gonzalez‐Uriarte, +21 more
0citations -
Cell-Specific Role of Platelet-Derived Growth Factor Subunit B (PDGF-B) in Kidney Fibrosis2024 Journal of the American Society of Nephrology article Medicine Chronic Kidney Disease and Diabetes
Barbara M. Klinkhammer, Eva Miriam Buhl, Tim Caspers, Dickson W.L. Wong, Michaël Goedertier, David Laurin Hölscher, +2 more
0citations -
A community-based transcriptomics classification and nomenclature of neocortical cell types2020 Nature Neuroscience article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Rafael Yuste, Michael Hawrylycz, Nadia Aalling, Argel Aguilar‐Valles, Detlev Arendt, Rubén Armañanzas, +59 more
30citations -
microbeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation2022 PLoS ONE article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Tim Scherr, Johannes Seiffarth, Bastian Wollenhaupt, Oliver Neumann, Marcel P. Schilling, Dietrich Kohlheyer, +3 more
11citations -
Industrializing CAR-T cell therapy: impact of automation on cost and space efficiency of manufacturing facilities2026 Frontiers in Bioengineering and Biotechnology article Medicine CAR-T cell therapy research Open access
Anna Louisa Weltin, Ysanne de Graaf, Amir Goudarzi, MJ Müller, Laura Herbst, Bastian Nießing, +2 more
6citations -
microbeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Tim Scherr, Johannes Seiffarth, Bastian Wollenhaupt, Oliver Neumann, Marcel P. Schilling, Dietrich Kohlheyer, +3 more
1citations