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673 (Re-) Solving the biology of colorectal cancer onset and progression to improve treatment and prevention2021 Regular and Young Investigator Award Abstracts conference-abstract Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Jessica P Roelands, Manon van der Ploeg, Hao Dang, Lukas J.A.C. Hawinkels, Hans Morreau, Noel de Miranda
2citations -
Spatial profiling of the spleen in mouse and human myelofibrosis reveals complement-driven immune-stromal interactions as a therapeutic target2026 Cell stem cell article Medicine Myeloproliferative Neoplasms: Diagnosis and Treatment Open access
Bérénice Dugué, Pia Wanner, Mayra L. Ruiz Tejada Segura, Mohamed Saad, Lucas Greven, Katrin Götz, +33 more
2citations -
Infiltrative classical monocyte-derived and SPP1 lipid-associated macrophages mediate inflammation and fibrosis in ANCA-associated glomerulonephritis2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Vasculitis and related conditions Open access
Yosta Vegting, Aldo Jongejan, Annette E. Neele, Nike Claessen, Gal Sela, Koen H.M. Prange, +10 more
2citations -
MACA: Marker-based automatic cell-type annotation for single cell expression data2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Yang Xu, Simon J. Baumgart, Christian M. Stegmann, Sikander Hayat
2citations -
Spatial transcriptomics uncovers hybrid, proinflammatory, and profibrotic cellular niches in pulmonary granuloma of patients with chronic sarcoidosis2026 American Journal of Respiratory and Critical Care Medicine article Medicine Sarcoidosis and Beryllium Toxicity Research Open access
Leonard Christian, Hande Yilmaz, Jannik Ruwisch, Leon Giercke, Benjamin Seeliger, Jan C. Kamp, +19 more
2citations -
Mechanisms of Podocyte Injury Due to Loss of the Nucleoporin NUP932025 Journal of the American Society of Nephrology article Medicine Renal Diseases and Glomerulopathies Open access
Hussein Bachir, Vanessa Krausel, Florian Buerger, Mohamed Hamed, Barbara Heitplatz, Veerle Van Marck, +11 more
2citations -
Alveolar macrophage activation and polarization signatures in stable lung transplant recipients and chronic lung allograft dysfunction2026 The Journal of Heart and Lung Transplantation article Medicine Transplantation: Methods and Outcomes Open access
Edith Katharina Plucinski, Jan C. Kamp, Svenja Gaedcke, Christopher Werlein, Stephanie Schubert, Da‐Hee Park, +11 more
2citations -
The Lettuce Expression Browser: from lab to LEB2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant Molecular Biology Research Open access
Dirk‐Jan M. van Workum, Esther S. van den Bergh, Siddhant S. Shetty, Jelmer van Lieshout, Tao Feng, Marrit C. Alderkamp, +12 more
1citations -
Evaluating exon-skipping therapies targeting the central nervous system in Duchenne muscular dystrophy using high-resolution spatial transcriptomics2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Muscle Physiology and Disorders Open access
Sharon I. de Vries, L. Heezen, Ophélie Vacca, Mathilde Doisy, Annemieke M Aartsma-Rus, Maaike van Putten, +3 more
1citations -
Immunomodulatory endothelial cells contribute to T cell recruitment and activation through antigen presentation on MHC class II2026 dissertation Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Matteo Cartura, Blerina Aliraj, Witold G. Szymanski, Giulio Ferrario, Flávia Rezende, Beyza Güven, +11 more
1citations -
Plant PhysioSpace: a robust tool to compare stress response across plant species2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Ali Hadizadeh Esfahani, Janina Maß, Asis Hallab, Bernhard Schuldt, David Nevarez, Björn Usadel, +3 more
1citations -
Multimodal analysis of vascular remodeling in human obliterative bronchiolitis after lung transplantation2026 American Journal of Transplantation article Medicine Transplantation: Methods and Outcomes Open access
Axelle Coppens, Rahel Bodenmann, Janik Riese, Huijuan Wang, Matthias Brunner, Mark Kuehnel, +22 more
1citations -
Single-Cell-Multiomics Demonstrates Molecular Efficacy of a Clinical Lentiviral Vector for Gene Therapy of RPS19-Deficient Diamond-Blackfan Anemia2023 Blood conference-abstract Biochemistry, Genetics and Molecular Biology Virus-based gene therapy research
Sofia Freiman, Jun Chen, Johan Flygare, Chayenne Kampman, Karin Pike‐Overzet, Alexander B. Mohseny, +6 more
1citations -
Multiomics of iPSC‐derived ApoE3‐ and ApoE4 astrocytes and microglia uncovers cell type specific dysregulation of immunometabolism2023 Alzheimer s & Dementia article Medicine Alzheimer's disease research and treatments Open access
Rik van der Kant, Niek Blomberg, Lena Erlebach, Femke M. Feringa, Jorin Heijneman, Sascha Koppes, +11 more
1citations -
Transcriptional response to host chemical cues underpins expansion of host range in a fungal plant pathogen lineage2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant pathogens and resistance mechanisms Open access
Stefan Kusch, Justine Larrouy, Heba M. M. Ibrahim, Noémie Gasset, Olivier Navaud, Malick Mbengué, +4 more
1citations -
YAP1 is essential for self-organized differentiation of pluripotent stem cells2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access
Kira Zeevaert, Roman Goetzke, Mohamed H. Elsafi Mabrouk, Catharina Maaßen, Ann-Christine Henneke, Chao He, +3 more
1citations -
Rapid liquid biopsy assessment through gene profiling from the kidney biopsy transport medium: A technical validation and a proof-of-concept pilot study2026 American Journal of Transplantation article Medicine Renal Transplantation Outcomes and Treatments Open access
Ziyang Li, Marij J.P. Welters, Hailiang Mei, Alexis Varin, Baptiste Lamarthée, Aiko P. J. de Vries, +2 more
1citations