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A cross-species spatial transcriptomic atlas of the human and non-human primate basal ganglia2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Madeleine N. Hewitt, Meghan A. Turner, Nelson Johansen, Delissa McMillen, Shu Dan, Mike DeBerardine, +46 more
10citations -
Cingulate networks associated with gray matter loss in Parkinson's disease show high expression of cholinergic genes in the healthy brain2021 European Journal of Neuroscience article Medicine Parkinson's Disease Mechanisms and Treatments Open access
Arlin Keo, Oleh Dzyubachyk, Jeroen van der Grond, Anne Hafkemeijer, Wilma D. J. van de Berg, Jacobus Johannes van Hilten, +2 more
9citations -
Refinement of histologic subtypes and identification of biomarkers linked to unfavorable prognosis in cholangiocarcinoma: The ENSCCA registries’ framework for digital twin advancement
Guido Carpino, Diletta Overi, Rocı́o I.R. Macı́as, Vincenzo Cardinale, Laura Izquierdo‐Sánchez, Pilar Acedo, +33 more
8citations -
Global deletion of the LXR-regulated gene EEPD1 reveals macrophage-specific changes in lipid metabolism and cholesterol efflux2025 Atherosclerosis article Biochemistry, Genetics and Molecular Biology Cholesterol and Lipid Metabolism Open access
Suzanne A.E. van Wouw, Melanie Loix, Roelof Ottenhoff, Jenina Kingma, Aldo Jongejan, Jeroen F. J. Bogie, +2 more
8citations -
Spatial transcriptomics uncovers hybrid, proinflammatory, and profibrotic cellular niches in pulmonary granuloma of patients with chronic sarcoidosis2026 American Journal of Respiratory and Critical Care Medicine article Medicine Sarcoidosis and Beryllium Toxicity Research Open access
Leonard Christian, Hande Yilmaz, Jannik Ruwisch, Leon Giercke, Benjamin Seeliger, Jan C. Kamp, +19 more
8citations -
Transcriptional landscape of mitochondrial electron transport chain inhibition in renal cells2023 Cell Biology and Toxicology article Biochemistry, Genetics and Molecular Biology Mitochondrial Function and Pathology Open access
Giada Carta, Wanda van der Stel, Emma W. J. Scuric, Liliana Capinha, Johannes Delp, Susanne Hougaard Bennekou, +5 more
8citations -
Extracellular Matrix Analysis of Human Renal Arteries in Both Quiescent and Active Vascular State2020 International Journal of Molecular Sciences article Medicine Tissue Engineering and Regenerative Medicine Open access
Laura Louzao-Martinez, Elise van Mulligen, Bart Boermans, Jeroen Demmers, Thierry P. P. van den Bosch, Marie‐José Goumans, +3 more
8citations -
A novel colony‐stimulating factor 1 (CSF1) translocation involving human endogenous retroviral element in a tenosynovial giant cell tumor2022 Genes Chromosomes and Cancer article Medicine Musculoskeletal synovial abnormalities and treatments Open access
Astrid Lipplaa, Debora M. Meijer, Michiel A. J. van de Sande, Hans A. J. Gelderblom, Judith V.M.G. Bovée, Hailiang Mei, +1 more
7citations -
The Cell Ontology in the age of single-cell omics2026 eScholarship (California Digital Library) article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access
Shawn Zheng Kai Tan, Aleix Puig-Barbe, Damien Goutte-Gattat, Caroline Eastwood, Brian D. Aevermann, Alida Avola, +29 more
7citations -
DUX4 activates common and context-specific intergenic transcripts and isoforms2025 Science Advances article Biochemistry, Genetics and Molecular Biology Muscle Physiology and Disorders Open access
Dongxu Zheng, Anita van den Heuvel, Judit Balog, Iris M. Willemsen, Susan L. Kloet, Stephen J. Tapscott, +2 more
6citations -
Axonopathy and altered synaptic development in early hippocampal epileptogenesis of Dravet syndrome2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Epilepsy research and treatment Open access
Nikolas Layer, Peter Müller, Maya Ayash, Friederike Pfeiffer, Meret Saile, Fabian Klopfer, +7 more
6citations -
The Plasmodium falciparum CCCH zinc finger protein ZNF4 plays an important role in gametocyte exflagellation through the regulation of male gametocyte enriched transcripts2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Malaria Research and Control Open access
Borja Hanhsen, Afia Farrukh, Gabriele Pradel, Che Julius Ngwa
6citations -
Identification of endothelial-to-mesenchymal transition gene signatures in single-cell transcriptomics of human atherosclerotic tissue2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Lotte Slenders, Marian Wesseling, Arjan Boltjes, Daniek Kapteijn, Marie A.C. Depuydt, Koen H.M. Prange, +8 more
6citations -
Pulmonary Microvascular Endothelial Cells Support Alveolar Epithelial Growth via Bone Morphogenetic Protein 6 Secretion2025 American Journal of Respiratory Cell and Molecular Biology article Medicine Neonatal Respiratory Health Research Open access
Luke van der Koog, Dyan F. Nugraha, Abilash Ravi, Justina Clarinda Wolters, Peter L. Horvatovich, Ken R. Bracke, +6 more
5citations -
Cell-type, single-cell, and spatial signatures of brain-region specific splicing in postnatal development2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology RNA Research and Splicing Open access
Anoushka Joglekar, Andrey D. Prjibelski, Ahmed Essam Mahfouz, Paul G. Collier, Susan Lin, Anna Katharina Schlusche, +22 more
5citations