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Predicting cell-type-specific exon inclusion in the human brain reveals more complex splicing mechanisms in neurons than glia2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology RNA Research and Splicing Open access
Lieke Michielsen, Justine Hsu, Anoushka Joglekar, Natan Belchikov, Marcel J. T. Reinders, Hagen Tilgner, +1 more
4citations -
Decentralized Motion Inference and Registration of Neuropixel Data2021 IEEE International Conference on Acoustics Speech and Signal Processing conference-paper Neuroscience Neuroscience and Neural Engineering
Erdem Varol, Julien Boussard, Nishchal Dethe, Olivier Winter, Anne E Urai, International Brain Laboratory, +2 more
20citations -
A unified rodent atlas reveals the cellular complexity and evolutionary divergence of the dorsal vagal complex2025 eLife preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Cecilia Hes, Abigail J. Tomlinson, Lieke Michielsen, Hunter J Murdoch, Maia V. Kokoeva, Paul V. Sabatini
7citations -
A unified rodent atlas reveals the cellular complexity and evolutionary divergence of the dorsal vagal complex2025 eLife article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Cecilia Hes, Abigail J. Tomlinson, Lieke Michielsen, Hunter J Murdoch, Maia V. Kokoeva, Paul V. Sabatini
0citations -
Fast creation of data-driven low-order predictive cardiac tissue excitation models from recorded activation patterns2024 Computers in Biology and Medicine article Medicine Cardiac electrophysiology and arrhythmias Open access
Desmond Kabus, Tim De Coster, Antoine A.F. de Vries, Daniël A. Pijnappels, Hans Dierckx
5citations -
Towards building the human lung perturbation atlas from slice cultures across health and disease2026 conference-abstract Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics
Lena Cords, Lea Zimmermann, Diana Porras-Gonzalez, Ahmed Agami, Sai Rama Sridatta Prakki, Danny David Jonigk, +12 more
0citations -
spacedeconv: deconvolution of tissue architecture from spatial transcriptomics2024 Research Square preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Constantin Zackl, Maria Zopoglou, Reto Stauffer, Markus Außerhofer, Marieke E. Ijsselsteijn, Gregor Sturm, +2 more
4citations -
AI-powered virtual tissues from spatial proteomics for clinical diagnostics and biomedical discovery2025 arXiv (Cornell University) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Johann Wenckstern, Eeshaan Jain, Kiril Vasilev, Matteo Pariset, Phil Fang Cheng, Olivier Alain Michielin, +3 more
10citations -
Comprehensive spatial profiling of the spleen in murine and human myelofibrosis identifies targetable immune-stromal interactions2025 Zenodo (CERN European Organization for Nuclear Research) dataset Medicine Myeloproliferative Neoplasms: Diagnosis and Treatment Open access
Bérénice Dugué, Wanner Pia, Mayra L. Ruiz Tejada Segura, Charles Dussiau, Rebekka K. Schneider
0citations -
Comprehensive spatial profiling of the spleen in murine and human myelofibrosis identifies targetable immune-stromal interactions2025 Zenodo (CERN European Organization for Nuclear Research) dataset Medicine Myeloproliferative Neoplasms: Diagnosis and Treatment Open access
Bérénice Dugué, Pia Wanner, Mayra L. Ruiz Tejada Segura, Charles Dussiau, Rebekka K. Schneider
0citations -
Accurate characterization of CRISPR-Cas9 genome editing outcomes and mosaicism with near-perfect long reads2026 Genome Medicine article Biochemistry, Genetics and Molecular Biology CRISPR and Genetic Engineering Open access
Ida Höijer, Robin van Schendel, Anastasia Emmanouilidou, Rebecka Östlund, Ignas Bunikis, Marcel Tijsterman, +2 more
1citations -
Density-dependent migration characteristics of cancer cells driven by pseudopod coordination2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cellular Mechanics and Interactions Open access
Gerhard A. Burger, Bob van de Water, Sylvia E. Le Dévédec, Joost B. Beltman
1citations -
Integrated intra‐ and intercellular signaling knowledge for multicellular omics analysis2021 Molecular Systems Biology article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Dénes Türei, Alberto Valdeolivas, Lejla Gul, Nicolàs Palacio‐Escat, Michal Klein, Olga Ivanova, +6 more
406citations -
Density-Dependent Migration Characteristics of Cancer Cells Driven by Pseudopod Interaction2022 Frontiers in Cell and Developmental Biology article Biochemistry, Genetics and Molecular Biology Cellular Mechanics and Interactions Open access
Gerhard A. Burger, Bob van de Water, Sylvia E. Le Dévédec, Joost B. Beltman
16citations -
Defining nature, responses and drivers of regulatory- and conventional CD4+ T cells in the human term decidua2026 Frontiers in Immunology article Immunology and Microbiology Reproductive System and Pregnancy Open access
Lotte J. Verleng, Julia Busselaar, Mark Mensink, Ellen Schrama, Hanneke Kapsenberg, Carin van der Keur, +5 more
2citations