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PeakPerformance - a tool for Bayesian inference-based fitting of LC-MS/MS peaks2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access
Jochen Nießer, Michael Osthege, Eric von Lieres, Wolfgang Wiechert, Stephan Noack
0citations -
Plant PhysioSpace: a robust tool to compare stress response across plant species2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Ali Hadizadeh Esfahani, Janina Maß, Asis Hallab, Bernhard Schuldt, David Nevarez, Björn Usadel, +3 more
1citations -
ProteoBench: the community-curated platform for comparing proteomics data analysis workflows2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Chemistry Advanced Proteomics Techniques and Applications Open access
Robbe Devreese, Caroline Jachmann, Bart Van Puyvelde, Holda A. Anagho, Witold Wolski, Henry Emanuel Webel, +44 more
6citations -
WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Chemistry Advanced Proteomics Techniques and Applications Open access
David Bouyssié, Pınar Altıner, Salvador Capella-Gutiérrez, José M. Fernández, Yanick Paco Hagemeijer, Peter L. Horvatovich, +12 more
2citations -
The Network Zoo: a multilingual package for the inference and analysis of biological networks2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Marouen Ben Guebila, Tian Wang, Camila M. Lopes‐Ramos, Viola Fanfani, Deborah A. Weighill, Rebekka Burkholz, +17 more
1citations -
A NEST-based framework unlocks massively parallel simulation of networks of multicompartment neurons with customizable subcellular dynamics2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Neural dynamics and brain function Open access
Willem A. M. Wybo, Leander Ewert, Charl Linssen, Pooja N. Babu, Elena Pastorelli, Pier Stanislao Paolucci, +1 more
0citations -
Image-Based Meta- and Mega-Analysis (IBMMA): A Unified Framework for Large-Scale, Multi-Site, Neuroimaging Data Analysis2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Functional Brain Connectivity Studies Open access
Rajendra A. Morey, Ahmed Tafsirul Hussain, Courtney E. Russell, Benjamin Suarez‐Jimenez, Elena Pozzi, Hadis Jameei, +87 more
1citations -
SymSeqBench: a unified framework for the generation and analysis of rule-based symbolic sequences and datasets2025 JuSER (Forschungszentrum Jülich) preprint Computer Science semigroups and automata theory Open access
Barna Zajzon, Younes Bouhadjar, Maxime Fabre, Felix Schmidt, Noah Ostendorf, Emre Neftci, +2 more
0citations -
SymSeqBench: a unified framework for the generation and analysis of rule-based symbolic sequences and datasets2025 arXiv (Cornell University) preprint Computer Science semigroups and automata theory Open access
Barna Zajzon, Younes Bouhadjar, Maxime Fabre, Felix Schmidt, Noah Ostendorf, Emre Neftci, +2 more
0citations -
MO-IOHinspector: Anytime Benchmarking of Multi-Objective Algorithms using IOHprofiler2024 arXiv (Cornell University) preprint Computer Science Advanced Multi-Objective Optimization Algorithms Open access
Diederick Vermetten, Jeroen Rook, Oliver Ludger Preuß, Jacob de Nobel, Carola Doerr, Manuel López‐Ibáñez, +2 more
0citations -
Convolutional Neural Networks for Automatic Detection of Intact Adenovirus from TEM Imaging with Debris, Broken and Artefacts Particles2023 arXiv (Cornell University) preprint Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Olivier Rukundo, Andrea Beháňová, Riccardo De Feo, Seppo Rönkkö, Joni Oja, Jussi Tohka
0citations -
FLAG-X: Hybrid machine learning workflows for automated gating of clinical flow cytometry data2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Paul Martini, Marziyeh Mohammadi, Michael Christoph Thrun, David B. Blumenthal, Stefan W. Krause
0citations -
Cross-comparison of state of the art neuromorphological simulators on modern CPUs and GPUs using the Brain Scaffold Builder2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science Parallel Computing and Optimization Techniques Open access
Robin De Schepper, Nora Abi Akar, Thorsten Hater, B. F. B. Huisman, Egidio Ugo D'Angelo, Abigail Morrison, +1 more
2citations