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Deep and accurate detection of m 6 A RNA modifications using miCLIP2 and m6Aboost machine learning2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology RNA modifications and cancer Open access
Nadine Körtel, Cornelia Rücklé, You Zhou, Anke Busch, Peter Hoch-Kraft, F.X. Reymond Sutandy, +12 more
3citations -
Repairability of Inexact Solvers in Recursive State Estimation with Machine Learning2026 arXiv (Cornell University) preprint Computer Science Target Tracking and Data Fusion in Sensor Networks Open access
Yanjun Ji, Dennis Willsch, Orkun Şensebat, Priyanka Arkalgud Ganeshamurthy, Zhi Pei, M. Sahnawaz Alam, +5 more
0citations -
STAPLER: Efficient learning of TCR-peptide specificity prediction from full-length TCR-peptide data2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access cited by 1 patent
Bjørn P. Y. Kwee, Marius Messemaker, Eric Marcus, Giacomo Oliveira, Wouter Scheper, Catherine J. Wu, +2 more
41citations -
Deep learning of personalized priors from past MRI scans enables fast, quality-enhanced point-of-care MRI with low-cost systems2025 arXiv (Cornell University) preprint Medicine Advanced MRI Techniques and Applications Open access
Tal Oved, Beatrice Lena, Chloé Najac, Sheng Shen, Matthew Scott Rosen, ANDREW G. WEBB, +1 more
1citations -
A machine learning method for the discovery of minimum marker gene combinations for cell type identification from single-cell RNA sequencing2021 Genome Research preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Brian D. Aevermann, Yun Zhang, Mark A. Novotny, Mohamed Keshk, Trygve E. Bakken, Jeremy A. Miller, +4 more
96citations -
immuneML: an ecosystem for machine learning analysis of adaptive immune receptor repertoires2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access
Milena Pavlović, Lonneke Scheffer, Keshav Motwani, Chakravarthi Kanduri, Radmila Kompova, Nikolay Vazov, +37 more
17citations -
NS-Forest: A machine learning method for the objective identification of minimum marker gene combinations for cell type determination from single cell RNA sequencing2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Brian D. Aevermann, Yun Zhang, Mark A. Novotny, Trygve E. Bakken, Jeremy A. Miller, Rebecca D. Hodge, +3 more
12citations -
Integrative learning of disentangled representations from single-cell RNA-sequencing datasets2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Claudio Novella-Rausell, Dorien J.M. Peters, Ahmed Essam Mahfouz
0citations -
Computation-Efficient Era: A Comprehensive Survey of State Space Models in Medical Image Analysis2024 arXiv (Cornell University) preprint Computer Science Advanced Neural Network Applications Open access
Moein Heidari, Sina Ghorbani Kolahi, Sanaz Karimijafarbigloo, Bobby Azad, Afshin Bozorgpour, Soheila Hatami, +5 more
4citations -
SymSeqBench: a unified framework for the generation and analysis of rule-based symbolic sequences and datasets2025 arXiv (Cornell University) preprint Computer Science semigroups and automata theory Open access
Barna Zajzon, Younes Bouhadjar, Maxime Fabre, Felix Schmidt, Noah Ostendorf, Emre Neftci, +2 more
0citations -
SymSeqBench: a unified framework for the generation and analysis of rule-based symbolic sequences and datasets2025 JuSER (Forschungszentrum Jülich) preprint Computer Science semigroups and automata theory Open access
Barna Zajzon, Younes Bouhadjar, Maxime Fabre, Felix Schmidt, Noah Ostendorf, Emre Neftci, +2 more
0citations -
Multicenter self-supervised computational pathology identifies prognostic histomorphological phenotypes in colorectal cancer2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science AI in cancer detection Open access
Floor Heilijgers, Hortense Le, Nicolas Coudray, Afreen Karimkhan, Derek Chen, Koen C.M.J. Peeters, +3 more
0citations -
mcBERT: Patient-Level Single-cell Transcriptomics Data Representation2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Benedikt von Querfurth, Johannes Lohmöller, Jan Pennekamp, Tore Bleckwehl, Rafael Kramann, Klaus Wehrle, +1 more
3citations -
Next-generation phenotyping integrated in a national framework for patients with ultra-rare disorders improves genetic diagnostics and yields new molecular findings2023 medRxiv preprint Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Axel Schmidt, Magdalena Danyel, Kathrin Grundmann, Theresa Brunet, Hannah Klinkhammer, Tzung‐Chien Hsieh, +94 more
15citations