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A virtual calibration chamber for cone penetration test based on deep-learning approaches2024 Journal of Rock Mechanics and Geotechnical Engineering article Engineering Geotechnical Engineering and Soil Mechanics Open access
Mingpeng Liu, Enci Sun, Ningning Zhang, Fengwen Lai, Raúl Fuentes
12citations -
Unsupervised protein embeddings outperform hand-crafted sequence and structure features at predicting molecular function2020 Bioinformatics article Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access cited by 2 patents
Amelia Villegas-Morcillo, Stavros Makrodimitris, Roeland C. H. J. van Ham, Angel Manuel Gomez, Marcel J. T. Reinders
137citations -
Gene and protein sequence features augment HLA class I ligand predictions2024 Cell Reports article Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access
Kaspar Bresser, Benoît P. Nicolet, Anita Jekő, Wei Wu, Fabricio Loayza‐Puch, Reuven Agami, +3 more
4citations -
Gene and protein sequence features augment HLA class I ligand predictions2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology vaccines and immunoinformatics approaches Open access
Kaspar Bresser, Benoît P. Nicolet, Anita Jekő, Wei Wu, Fabricio Loayza‐Puch, Reuven Agami, +3 more
0citations -
Pushing the Limit of Asteroseismic Detection for Cool Dwarfs Using TESS and Deep Learning2026 The Astrophysical Journal article Physics and Astronomy Stellar, planetary, and galactic studies Open access
Waly M Z Karim, Rocio Kiman, Derek L. Buzasi, Cecilia Garraffo, Joshua Wing, Jim Fuller, +3 more
0citations -
Neural Combinatorial Optimization for Production Scheduling with Sequence-Dependent Setup Waste2020 Conference proceedings/Conference proceedings - IEEE International Conference on Systems, Man, and Cybernetics conference-paper Engineering Scheduling and Optimization Algorithms
Aymen Gannouni, Владимир Самсонов, Mohamed Behery, Tobias Meisen, Gerhard Lakemeyer
12citations -
COSMOS2020: Manifold learning to estimate physical parameters in large galaxy surveys2022 Astronomy and Astrophysics article Physics and Astronomy Galaxies: Formation, Evolution, Phenomena Open access
I. Davidzon, Keerthana Jegatheesan, Olivier Ilbert, S. de la Torre, S. K. Leslie, C. Laigle, +13 more
29citations -
Predicting cell population-specific gene expression from genomic sequence2022 Zenodo (CERN European Organization for Nuclear Research) article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Lieke Michielsen, Marcel J. T. Reinders, Ahmed Essam Mahfouz
0citations -
Cell type matching across species using protein embeddings and transfer learning2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Kirti Biharie, Lieke Michielsen, Marcel J. T. Reinders, Ahmed Essam Mahfouz
0citations