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Quantitative phosphoproteomics to unravel the cellular response to chemical stressors with different modes of action2020 Archives of Toxicology article Chemistry Advanced Proteomics Techniques and Applications Open access
Bharath K. Sampadi, Alex Pines, Stephanie Munk, Branislav Mišovic, Anton J.L. de Groot, Bob van de Water, +3 more
17citations -
Modulation of nucleotide metabolism by picornaviruses2024 PLoS Pathogens article Biochemistry, Genetics and Molecular Biology Biochemical and Molecular Research Open access
Lonneke V. Nouwen, Martijn Breeuwsma, Esther A. Zaal, Chris H.A. van de Lest, Inge Buitendijk, Marleen Zwaagstra, +4 more
14citations -
Insights from the First Phosphopeptide Challenge of the MS Resource Pillar of the HUPO Human Proteome Project2020 Journal of Proteome Research article Chemistry Advanced Proteomics Techniques and Applications Open access
Michael R. Hoopmann, Ulrike Kusebauch, Magnus Palmblad, Nuno Bandeira, David D. Shteynberg, Ling-jie He, +5 more
10citations -
CellEKT: A Robust Chemical Proteomics Workflow to Profile Cellular Target Engagement of Kinase Inhibitors2025 Molecular & Cellular Proteomics article Chemistry Advanced Proteomics Techniques and Applications Open access
Joel Rüegger, Berend Gagestein, Antonius P. A. Janssen, Alexandra Valeanu, Alger Lazo Mori, Marielle van der Peet, +16 more
9citations -
FtsZ phosphorylation pleiotropically affects Z-ladder formation, antibiotic production, and morphogenesis in Streptomyces coelicolor2022 Antonie van Leeuwenhoek article Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Paula Yagüe, Joost J. Willemse, Xiansha Xiao, Le Zhang, Ángel Manteca, Gilles P. van Wezel
7citations -
CellEKT: A robust chemical proteomics workflow to profile cellular target engagement of kinase inhibitors2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Chemistry Advanced Proteomics Techniques and Applications Open access
Joel Rüegger, Berend Gagestein, Antonius P. A. Janssen, Alexandra Valeanu, Alger Lazo Mori, Marielle van der Peet, +16 more
1citations -
Dynamic multi-omics and mechanistic modeling approach uncovers novel mechanisms of kidney fibrosis progression2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Chronic Kidney Disease and Diabetes Open access
Nadine Tuechler, Mira Lea Burtscher, Martín Garrido‐Rodríguez, Muzamil Majid Khan, Dénes Türei, Christian Tischer, +8 more
0citations -
Community-driven advances in computational mass spectrometry: The perspective of EuBIC-MS members2026 Journal of Proteomics article Chemistry Advanced Proteomics Techniques and Applications Open access
Dirk Winkelhardt, Julia Patricia Schessner, Sven Berres, Alireza Nameni, Armin Soleymaniniya, Ayla Schröder, +17 more
0citations -
Activated Dendritic Cells Round their Nuclei through Adhesion Loss and Atypical Cofilin Signaling2022 Zenodo (CERN European Organization for Nuclear Research) article Biochemistry, Genetics and Molecular Biology Nuclear Structure and Function Open access
Harry M. Warner, Giulia Franciosa, Guus van der Borg, Felix Faas, Claire Koenig, Rinse de Boer, +12 more
0citations -
Multi-omics reveals global signaling rewiring and identifies Activin A-induced dysregulation of FOS/Activator Protein 1 as a novel target in Fibrodysplasia ossificans progressiva2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Heterotopic Ossification and Related Conditions Open access
Marius Wits, Nerea Gomez-Suarez, Alexandre Deber, Nicole Farfán, Fjodor T. Bekedam, Bharath K. Sampadi, +8 more
0citations -
MSstatsBioNet: Integrating Statistical Analyses with Prior Knowledge Biomolecular Networks for Quantitative Proteomics and Phosphoproteomics2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Anthony Wu, Devon Kohler, Pruthvi Prakash Navada, Julia E. Robbins, Gabriel E. Boyle, Alex Boshart, +7 more
0citations -
Phosphorylation of serines 287/288 in DEK regulates cell-type-specific chromatin occupancy and compaction2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Gongjie Wu, M. F. Meister, Sandra Reissner, Pia J Mueller, Ferdinand Kappes
0citations