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T-DNA integration in plants requires MRE11- or TDP2-mediated removal of the 5’ bound Agrobacterium protein VirD22021 Research Square preprint Biochemistry, Genetics and Molecular Biology Plant tissue culture and regeneration Open access
Lejon E. M. Kralemann, Sylvia de Pater, Hexi Shen, Susan L. Kloet, Robin van Schendel, Paul J. J. Hooykaas, +1 more
1citations -
AtlasOT - The Fused Unbalanced Gromov-Wasserstein for Multimodal Integration of Disease Atlases2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Kai Peng, Mayra L. Ruiz Tejada Segura, Barthélémy Caron, Christoph Kuppe, James Shiniti Nagai, Ivan G. Costa
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Proteome modulation by opposite inotropic drugs in human engineered cardiac tissue revealed by topology-driven cross-modal integration2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Chemistry Advanced Proteomics Techniques and Applications Open access
Doroteya K. Staykova, Danique Snippert, Hans J. C. T. Wessels, R. C. Passier, Federica Conte
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Epigenetic neural glioblastoma enhances synaptic integration and predicts therapeutic vulnerability2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Glioma Diagnosis and Treatment Open access
Richard Drexler, Robin Khatri, Thomas Sauvigny, Malte Mohme, Cécile L. Maire, Alice Senta Ryba, +36 more
10citations -
fluxTrAM: Integration of tracer-based metabolomics data into atomically resolved genome-scale metabolic networks for metabolic flux analysis2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Luojiao Huang, German Preciat, Jesús Alarcón-Gil, Edinson Lucumi Moreno, Agnieszka B. Wegrzyn, Ines Thiele, +4 more
1citations -
Genosolver: Rare Disease Diagnosis through Holistic Integration of Unstructured Clinical Narratives Using Large Language and Reasoning Models2026 medRxiv preprint Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Tanhim Islam, Martin Danner, Zain Ziad, Matthias Begemann, Danique Beijer, Annette Lischka, +21 more
0citations -
Empirical Material Sampling and Linearisation -- A Simple and Efficient Strain-Space Model Order Reduction Approach for Computational Homogenisation in Large-Deformation Hyperelasticity0citations
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PlantMetWiki: a FAIR knowledge graph for plant metabolic pathway cross-species representation and integration2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Elena Del Pup, M Muller, Marvin Martens, Egon Willighagen, Marnix H. Medema, Denise Slenter, +1 more
0citations