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CrossTalkeR: Analysis and Visualisation of Ligand Receptor Networks2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
James Shiniti Nagai, Nils B. Leimkühler, Michael T. Schaub, Rebekka K. Schneider, Ivan G. Costa
9citations -
Decoding myofibroblast origins in human kidney fibrosis2020 Edinburgh Research Explorer (University of Edinburgh) dataset Medicine Chronic Kidney Disease and Diabetes Open access
Christoph Kuppe, Mahmoud M. Ibrahim, Jennifer Kranz, Xiaoting Zhang, Susanne Maria Ziegler, Jitske Jansen, +23 more
2citations -
Decoding myofibroblast origins in human kidney fibrosis2020 Zenodo (CERN European Organization for Nuclear Research) dataset Medicine Chronic Kidney Disease and Diabetes Open access
Christoph Kuppe, Mahmoud M. Ibrahim, Jennifer Kranz, Xiaoting Zhang, Susanne Maria Ziegler, Jitske Jansen, +23 more
0citations -
Multimodal analysis unveils tumor microenvironment heterogeneity linked to immune activity and evasion2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Cancer Immunotherapy and Biomarkers Open access
Óscar Lapuente-Santana, Gregor Sturm, Markus Außerhofer, Constantin Zackl, Maria Zopoglou, Nicholas McGranahan, +5 more
0citations -
The proteomic landscape of proteotoxic stress in a fibrogenic liver disease2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Chemistry Advanced Proteomics Techniques and Applications Open access
Florian A. Rosenberger, Sophia Clara Mädler, Katrine Holtz Thorhauge, Sophia Steigerwald, Malin Fromme, Caroline A M Weiss, +13 more
2citations -
mOTUs marker gene database (v4)2026 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Hans-Joachim Ruscheweyh, Marija Dmitrijeva, Lilith Feer, Samuel Miravet‐Verde, Anna Sintsova, Daniel R. Mende, +2 more
0citations -
O-300 Characterization of the transcriptional changes of human endometrium across the window of implantation during natural cycles reveals consistent dynamics2025 Human Reproduction conference-abstract Immunology and Microbiology Reproductive System and Pregnancy Open access
Irene Miguel-Escalada, Berta Gayete-Mor, Lucía Álvarez-González, Marta Trullenque, Anna Blázquez, J J Guillén-Quílez, +7 more
0citations -
Community-driven advances in computational mass spectrometry: The perspective of EuBIC-MS members2026 Journal of Proteomics article Chemistry Advanced Proteomics Techniques and Applications Open access
Dirk Winkelhardt, Julia Patricia Schessner, Sven Berres, Alireza Nameni, Armin Soleymaniniya, Ayla Schröder, +17 more
0citations -
P-802 Unraveling a distinct role for GATA3 in mouse and human trophectoderm development via CRISPR/Cas9 gene editing2025 Human Reproduction conference-abstract Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access
Sofie Declercq, Gwenny Cosemans, Tijs Vanhessche, Dominic Stoop, Susana M. Chuva de Sousa Lopes, Kim De Leeneer, +2 more
0citations -
ChemR23 prevents phenotypic switching of vascular smooth muscle cells into macrophage-like foam cells in atherosclerosis2025 Cardiovascular Research article Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Bryce R. Evans, Julia Schulz, Vasiliki Triantafyllidou, Anaïs Yerly, Manovriti Thakur, Nico Angliker, +17 more
15citations -
ETV2 upregulation marks the specification of early cardiomyocytes and endothelial cells during co-differentiation2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access
Xu Cao, Maria Mircea, Gopala Krishna Yakala, Francijna E. van den Hil, Marcella Brescia, Hailiang Mei, +3 more
1citations -
Explainable multiview framework for dissecting spatial relationships from highly multiplexed data2022 Genome biology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Jovan Tanevski, Ricardo O. Ramirez Flores, Attila Gábor, Denis Schapiro, Julio Sáez-Rodríguez
291citations -
Hand2 delineates mesothelium progenitors and is reactivated in mesothelioma2022 Nature Communications article Biochemistry, Genetics and Molecular Biology Developmental Biology and Gene Regulation Open access
Karin D. Prummel, Helena Lucia Crowell, Susan Nieuwenhuize, Eline Constance Brombacher, Stephan Daetwyler, Charlotte Soneson, +17 more
39citations -
The landscape of tertiary lymphoid structures in endometrial cancer revealed through harmonized multi-level transcriptomics2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Cancer Immunotherapy and Biomarkers Open access
Marta Requesens, Koen Brummel, Arkajyoti Bhattacharya, Feija Somefun, Nienke van Rooij, Annechien Plat, +10 more
0citations