mOTUs marker gene database (v4)

Zenodo (CERN European Organization for Nuclear Research)

Abstract

Note: This is the mOTUs 4.1-toy database used for testing. It contains 12 mOTUs from the OMM12. Don't use for actual profiling. Database for the marker gene-based OTU (mOTU) tool (v4). The mOTUs profiler is a computational tool that estimates relative abundance of known and unknown microbial community members using metagenomic shotgun sequencing data. Github directory of the tool: link In the current version, 124,295 species-level taxonomic units (mOTUs) were constructed using sequences of 10 single-copy marker genes recovered from mOTUs-db, a collection of 2.83 million metagenome-assembled genomes (MAGs) and 919 090 single-cell and isolate genomes. 30,256 mOTUs are represented by an isolate genome, whereas 94,039 mOTUs are represented by MAGs only. The source genome database is accessible at https://motus-db.org/.

Authors 8

1. Hans-Joachim Ruscheweyh

   SIB Swiss Institute of Bioinformatics · ETH Zurich

   Affiliation as printed

   ETH Zurich

   SIB Swiss Institute of Bioinformatics

2. Marija Dmitrijeva

   SIB Swiss Institute of Bioinformatics · ETH Zurich

   Affiliation as printed

   ETH Zurich

   SIB Swiss Institute of Bioinformatics

3. Lilith Feer

   ETH Zurich

   Affiliation as printed

   ETH Zurich

4. Samuel Miravet‐Verde

   SIB Swiss Institute of Bioinformatics · ETH Zurich

   Affiliation as printed

   ETH Zurich

   SIB Swiss Institute of Bioinformatics

5. Anna Sintsova

   SIB Swiss Institute of Bioinformatics · ETH Zurich

   Affiliation as printed

   ETH Zurich

   SIB Swiss Institute of Bioinformatics

6. Daniel R. Mende

   Keio University

   Affiliation as printed

   Keio University

7. Georg Zeller Aachen

   Leiden University

   Affiliation as printed

   Leiden University

8. Shinichi Sunagawa

   SIB Swiss Institute of Bioinformatics · ETH Zurich

   Affiliation as printed

   ETH Zurich

   SIB Swiss Institute of Bioinformatics