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Serum proteomics of adults with acute liver failure provides mechanistic insights and attractive prognostic biomarkers2025 JHEP Reports article Pharmacology, Toxicology and Pharmaceutics Drug-Induced Hepatotoxicity and Protection Open access
Katharina Remih, Franziska-Maria Hufnagel, Anna Sophie Karl, Valerie L. Durkalski‐Mauldin, William M. Lee, Constantine Jason Karvellas, +14 more
5citations -
IntraTalker - Modelling Intracellular Signalling in Cellular Crosstalk2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Vanessa Klöker, James S. Nagai, Z. Feng, Lampros Mavrommatis, Larissa Hermanns, Jacqueline Michelle Jara Moscoso, +3 more
1citations -
POS0680 BELIMUMAB ADD-ON THERAPY MOBILISES MEMORY B CELLS INTO THE CIRCULATION OF PATIENTS WITH SLE2021 Annals of the Rheumatic Diseases conference-abstract Medicine Systemic Lupus Erythematosus Research Open access
Eline J. Arends, Mihaela Zlei, Christopher M. Tipton, Zgjim Osmani, Sylvia W.A. Kamerling, Ton J. Rabelink, +4 more
9citations -
Bulk RNA sequencing deconvolution of early-onset pancreatic ductal adenocarcinoma identifies cancer-associated fibroblast subsets associated with survival and tumor microenvironment composition2026 Cancer Treatment and Research Communications article Medicine Pancreatic and Hepatic Oncology Research Open access
Nicole Dam, Mischa Steketee, Gaby J. Strijk, Willem de Koning, Lukas J.A.C. Hawinkels, Vera Kemp, +2 more
0citations -
Bulk RNA sequencing deconvolution of early-onset pancreatic ductal adenocarcinoma identifies cancer-associated fibroblast subsets associated with survival and tumor microenvironment composition2026 Cancer Treatment and Research Communications article Medicine Pancreatic and Hepatic Oncology Research Open access
Nicole Dam, Mischa Steketee, Gaby J. Strijk, Willem de Koning, Lukas J.A.C. Hawinkels, Vera Kemp, +3 more
0citations -
Protocol for multispectral imaging on cryosections to map myeloid cell heterogeneity in its spatial context2023 STAR Protocols article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Elias B Wieland, Laura JAP Kempen, Chang Wei Lu, Marjo M. P. C. Donners, Erik A.L. Biessen, Pieter Goossens
2citations -
SpaGE Spatial Gene Enhancement using scRNA-seq2020 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tamim Abdelaal, Soufiane M. C. Mourragui, Ahmed Essam Mahfouz, Marcel J. T. Reinders
1citations -
Simulated data for CellDEEP analysis2026 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Yiyi Cheng, Toby Kettlewell, Ross F Laidlaw, Olympia Melek Hardy, Andrew R. McCluskey, Thomas D. Otto, +1 more
0citations -
Simulated data for CellDEEP analysis2026 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Yiyi Cheng, Toby Kettlewell, Ross F Laidlaw, Olympia Melek Hardy, Andrew McCluskey, Thomas D. Otto, +1 more
0citations -
SpaGE Spatial Gene Enhancement using scRNA-seq2020 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tamim Abdelaal, Soufiane M. C. Mourragui, Ahmed Essam Mahfouz, Marcel J. T. Reinders
0citations -
Smad4 and TGFβ1 dependent gene expression signatures in conditional intestinal adenoma, organoids and colorectal cancer2025 Scientific Reports article Biochemistry, Genetics and Molecular Biology TGF-β signaling in diseases Open access
Mirvat Surakhy, David Barnes, Emma J. Carter, Jennifer Hughes, Claudia Bühnemann, Sabina Sanegre, +4 more
4citations -
Smad4 and TGF-β1 dependent gene expression biomarkers in conditional intestinal adenoma, organoids and colorectal cancer2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology TGF-β signaling in diseases Open access
Mirvat Surakhy, Emma J. Carter, Jennifer Hughes, Claudia Bühnemann, Sabina Sanegre, Hans M. Morreau, +3 more
0citations -
Towards building the human lung perturbation atlas from slice cultures across health and disease2026 conference-abstract Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics
Lena Cords, Lea Zimmermann, Diana Porras-Gonzalez, Ahmed Agami, Sai Rama Sridatta Prakki, Danny David Jonigk, +12 more
0citations -
Faculty Opinions recommendation of Integrated scRNA-Seq Identifies Human Postnatal Thymus Seeding Progenitors and Regulatory Dynamics of Differentiating Immature Thymocytes.0citations
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A unified rodent atlas reveals the cellular complexity and evolutionary divergence of the dorsal vagal complex2025 eLife preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Cecilia Hes, Abigail J. Tomlinson, Lieke Michielsen, Hunter J Murdoch, Maia V. Kokoeva, Paul V. Sabatini
7citations -
A unified rodent atlas reveals the cellular complexity and evolutionary divergence of the dorsal vagal complex2025 eLife article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Cecilia Hes, Abigail J. Tomlinson, Lieke Michielsen, Hunter J Murdoch, Maia V. Kokoeva, Paul V. Sabatini
0citations -
Resolving the immune response across clonal cancer evolution in situ with Atera whole transcriptome profiling2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Shaocheng Wu, Mohita Mahajan, Maarten van der Linde, Chunfang Zhu, Robert B. West, David G.P. van IJzendoorn, +1 more
1citations -
Non-Canonical Hedgehog Signaling Mediates Profibrotic Hematopoiesis-Stroma Crosstalk in Myeloproliferative Neoplasms2023 Zenodo (CERN European Organization for Nuclear Research) dataset Medicine Myeloproliferative Neoplasms: Diagnosis and Treatment Open access
Jessica Ellen Pritchard, Juliette Pearce, Rebekka K. Schneider
0citations