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SpaGE Spatial Gene Enhancement using scRNA-seq2020 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tamim Abdelaal, Soufiane M. C. Mourragui, Ahmed Essam Mahfouz, Marcel J. T. Reinders
1citations -
SpaGE Spatial Gene Enhancement using scRNA-seq2020 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tamim Abdelaal, Soufiane M. C. Mourragui, Ahmed Essam Mahfouz, Marcel J. T. Reinders
0citations -
Human Neocortical Glutamatergic Neurons Revealed Through Multimodal Profiling2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Rachel A. Dalley, Sarah Walling-Bell, Jeremy A. Miller, Femke Waleboer, Julian Thijssen, Audrey McCutcheon, +92 more
5citations -
Deciphering the Signaling Network Landscape of Breast Cancer Improves Drug Sensitivity Prediction2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology PI3K/AKT/mTOR signaling in cancer Open access
Marco Tognetti, Attila Gábor, Mi Yang, Valentina Cappelletti, Jonas Windhager, Konstantina Charmpi, +5 more
5citations -
Deciphering the signaling network of breast cancer improves drug sensitivity prediction2021 Cell Systems article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access
Marco Tognetti, Attila Gábor, Mi Yang, Valentina Cappelletti, Jonas Windhager, Oscar M. Rueda, +9 more
45citations -
IFNɣ but not IFNα increases recognition of insulin defective ribosomal product-derived antigen to amplify islet autoimmunity2023 Diabetologia article Biochemistry, Genetics and Molecular Biology Diabetes and associated disorders Open access
Sofia Thomaidou, Amadeo Munoz-Garcia, Sabine de Lange, Arno R. van der Slik, Rob C. Hoeben, Bart O. Roep, +2 more
18citations -
CrossTalkeR: analysis and visualization of ligand–receptorne tworks2021 Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
James Shiniti Nagai, Nils B. Leimkühler, Michael T. Schaub, Rebekka K. Schneider, Ivan G. Costa
58citations -
Mass cytometry data integration methods reveal rural-urban gradient of immune profiles across geography2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics
Koen A. Stam, Jeremia Jackson Pyuza, Mikhael D. Manurung, Dicky L. Tahapary, Taniawati Supali, Marloes M.A.R. van Dorst, +5 more
1citations -
Semi and fully automated immunostaining sample preparation platforms improve live leukocyte recovery, reproducibility, and flow cytometry data quality2022 The Journal of Immunology conference-abstract Engineering Microfluidic and Bio-sensing Technologies
Geoffrey K. Feld, Melvin Lye, Christoph S. Eberle, Ann Wang, Chyan Ying Ke
0citations -
Functional and spatial proteomics profiling reveals intra- and intercellular signaling crosstalk in colorectal cancer2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Colorectal Cancer Treatments and Studies Open access
Christina Plattner, Giorgia Lamberti, Peter Blattmann, Alexander Kirchmair, Dietmar Rieder, Zuzana Loncová, +23 more
0citations -
Increased Phosphorylation of Intracellular Signaling Molecules Indicates Continuous Activation of Human Autoreactive B‐Cells2025 European Journal of Immunology article Immunology and Microbiology T-cell and B-cell Immunology Open access
Sanne Kroos, Nienke J. Blomberg, Joanneke C. Kwekkeboom, Rudi W. Hendriks, Odilia B. J. Corneth, René E. M. Toes, +1 more
4citations