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CaClust: linking genotype to transcriptional heterogeneity of follicular lymphoma using BCR and exomic variants2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Kazimierz Oksza-Orzechowski, Edwin Quinten, Shadi Darvish Shafighi, Szymon M. Kiełbasa, Hugo W van Kessel, Ruben A. L. de Groen, +6 more
1citations -
Mapping T cell dynamics to molecular profiles through behavior-guided transcriptomics2025 Nature Protocols review Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Amber K. L. Wezenaar, Farid Keramati, M Hernandez-Roca, Péter Brázda, Mario Barrera Román, Astrid Cleven, +12 more
8citations -
PathwayFinder enables linked exploration of cell types and gene modules in spatially resolved transcriptomics data2026 iScience article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Chang Li, Julian Thijssen, Thomas Kroes, Lisa Koorneef, Thomas Höllt, Louise van der Weerd, +1 more
0citations -
Integrating cell interaction with transcript factors to obtain a robust gene panel for prognostic prediction and therapies in cholangiocarcinoma2022 Research Square preprint Medicine Cholangiocarcinoma and Gallbladder Cancer Studies Open access
Tingjie Wang, Chuanrui Xu, Dan Xu, Xiaofei Yang, Yaxin Liu, Xiujuan Li, +4 more
0citations -
Anaerobic single‐cell dispensing facilitates the cultivation of human gut bacteria2022 Environmental Microbiology article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Afrizal Afrizal, Thomas C. A. Hitch, Alina Viehof, Nicole Simone Treichel, Birte Abt, Eva Miriam Buhl, +3 more
61citations -
Oropharyngeal cancer cell evolution in the context of tumor-specific immunity2026 Zenodo (CERN European Organization for Nuclear Research) dataset Medicine Cancer Immunotherapy and Biomarkers Open access
Roderick Slieker, Saskia J A M Santegoets, Nynke Damstra, Sanne Boekestijn, Marij J.P. Welters, Sjoerd H. van der Burg
0citations -
Oropharyngeal cancer cell evolution in the context of tumor-specific immunity2026 Zenodo (CERN European Organization for Nuclear Research) dataset Medicine Cancer Immunotherapy and Biomarkers Open access
Roderick C. Slieker, Saskia J A M Santegoets, Nynke Damstra, Sanne Boekestijn, Marij J.P. Welters, Sjoerd H. van der Burg
0citations -
Unraveling the Complexity of the Cancer Microenvironment With Multidimensional Genomic and Cytometric Technologies2020 Frontiers in Oncology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 2 patents
Natasja L. De Vries, Ahmed Essam Mahfouz, Frits Koning, Noel F.C.C. de Miranda
60citations -
Mapping the Molecular Atlas of Podocyte Response to Glucocorticoids Using Multi-Omics Analyses2023 Journal of the American Society of Nephrology conference-abstract Medicine Renal Diseases and Glomerulopathies
Martijn van den Broek, Bartholomeus T. van den Berge, Michiel F. Schreuder, Bart Smeets, Jitske Jansen
0citations -
Cell Type- and Diabetic Kidney Disease-Specific Expression of Long Noncoding RNAs in Human Kidneys2024 Journal of the American Society of Nephrology article Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research
Juliette A. de Klerk, Roderick C. Slieker, Hao Wu, Yoshiharu Muto, Floris Herrewijnen, Leen M. ‘t Hart, +8 more
0citations -
Single cell transcriptomics of human kidney organoid endothelium reveals vessel growth processes and arterial maturation upon transplantation2025 npj Regenerative Medicine article Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access
Marije Koning, Sébastien J. Dumas, Elda Meta, Ellen Lievers, Annemarie M. A. de Graaf, Mila Borri, +8 more
10citations -
An Integrated Gene Expression Landscape Profiling Approach to Identify Lung Tumor Endothelial Cell Heterogeneity and Angiogenic Candidates2020 Cancer Cell article Biochemistry, Genetics and Molecular Biology Angiogenesis and VEGF in Cancer Open access
Jermaine Goveia, Kateřina Rohlenová, Federico Taverna, Lucas Treps, Lena‐Christin Conradi, Andreas Pircher, +43 more
492citations -
Cell Type-Specific and Diabetic Kidney Disease-Associated Expression of Long Non-Coding RNAs in Human Kidneys2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research
Juliette A. de Klerk, Roderick C. Slieker, Hao Wu, Yoshiharu Muto, Rudmer J. Postma, Leen M. ‘t Hart, +14 more
0citations -
Live-cell imaging enables reporter-free monitoring of the circadian rhythm in individual Synechocystis cells2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Circadian rhythm and melatonin Open access
Lennart Witting, Florian Pascal Stirba, Julius Nohr, Petra Kolkhof, Dietrich Kohlheyer, Anika Wiegard, +1 more
0citations -
Cell Type–Specific Expression of Long Noncoding RNAs in Human Diabetic Kidneys Identifies TARID as a Key Regulator of Podocyte Function2025 Diabetes article Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research Open access
Juliette A. de Klerk, Roderick C. Slieker, Hao Wu, Yoshiharu Muto, Rudmer J. Postma, Leen M. ‘t Hart, +14 more
0citations -
Human pluripotent stem cell fate trajectories toward lung and hepatocyte progenitors2023 iScience article Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access
Chaido Ori, Meshal Ansari, Ilias Angelidis, Ruth Olmer, Ulrich Martin, Fabian Joachim Theis, +2 more
4citations