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Simulated data for CellDEEP analysis2026 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Yiyi Cheng, Toby Kettlewell, Ross F Laidlaw, Olympia Melek Hardy, Andrew R. McCluskey, Thomas D. Otto, +1 more
0citations -
Simulated data for CellDEEP analysis2026 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Yiyi Cheng, Toby Kettlewell, Ross F Laidlaw, Olympia Melek Hardy, Andrew McCluskey, Thomas D. Otto, +1 more
0citations -
Pathogen Resistance Depending on Jacalin-Dirigent Chimeric Proteins Is Common among Poaceae but Absent in the Dicot Arabidopsis as Evidenced by Analysis of Homologous Single-Domain Proteins2022 Plants article Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access
Lara Esch, Christian Kirsch, Lara Vogel, Jana M. Kelm, Nikolai Huwa, Thomas Claßen, +1 more
7citations -
FAIR GraphRAG: A Retrieval-Augmented Generation Approach for Semantic Data Analysis2025 IEEE International Conference on Knowledge Graph (ICKG) conference-paper Computer Science Research Data Management Practices Open access
Marlena Flüh, Soo-Yon Kim, Carolin Victoria Schneider, Sandra Geisler
1citations -
NuclearIDTracker resolves intestinal cell identity and lineage dynamics through nuclear phenotypic signatures2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Nguyen BT Nguyen, Rutger N.U. Kok, Sira Gevers, Max A. Betjes, Lukas Ritter, Danny Feijtel, +5 more
0citations -
Batch-effect correction improves downstream imaging mass cytometry data quality and facilitates robust cell type identification in the liver and hepatocellular carcinoma microenvironment2025 Zeitschrift für Gastroenterologie conference-paper Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics
Henrike Salié, Ana Marta Sequeira, Marieke E. Ijsselsteijn, Felix Röttele, Yuan Suo, Lara Wischer, +4 more
0citations -
Analyzing Cell Type-Specific Dynamics of Metabolism in Kidney Repair2022 Journal of the American Society of Nephrology article Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies
Ton J. Rabelink, Gangqi Wang, Bram Heijs, Sarantos Kostidis, Ahmed Essam Mahfouz, Rosalie G. J. Rietjens, +8 more
4citations -
Live-cell imaging enables reporter-free monitoring of the circadian rhythm in individual Synechocystis cells2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Circadian rhythm and melatonin Open access
Lennart Witting, Florian Pascal Stirba, Julius Nohr, Petra Kolkhof, Dietrich Kohlheyer, Anika Wiegard, +1 more
0citations -
Privacy-Preserving Detection of Rare Disease-Associated Cell Subsets via Secure Multi-Party Computation2026 arXiv (Cornell University) preprint Computer Science Privacy-Preserving Technologies in Data Open access
Şeyma Selcan Mağara, Esther Havemann, Debora Jutz, Ali Burak Ünal, Mete Akgün
0citations -
Human umbilical cord mesenchymal stem cell-derived treatment of severe pulmonary arterial hypertension2022 Nature Cardiovascular Research article Medicine Mesenchymal stem cell research Open access cited by 3 patents
Georg Hansmann, Philippe Chouvarine, Franziska Diekmann, Martin A. Giera, Markus Ralser, Michael Mülleder, +4 more
23citations -
Identification of CD8+ T cell PRDM1 in high-risk human plaques and its regulatory role in murine lesion development2022 Cardiovascular Research article Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Han Young Jin, Chang Wei Lu, Jan Nagenborg, Marco Manca, Joël Karel, Rachel Cavill, +7 more
0citations -
Sex-dependent gene regulation of human atherosclerotic plaques by DNA methylation and transcriptome integration points to smooth muscle cell involvement in women2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Robin J. G. Hartman, Marten A. Siemelink, Saskia Haitjema, Koen F. Dekkers, Lotte Slenders, Arjan Boltjes, +8 more
3citations -
Comparative cellular analysis of motor cortex in human, marmoset and mouse2021 Nature article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Trygve E. Bakken, Nikolas L. Jorstad, Qiwen Hu, Blue B. Lake, Wei Tian, Brian E. Kalmbach, +93 more
882citations -
Inflammation-driven reprogramming of goblet cells underlies the onset of serrated adenomas in colon cancer2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Mathijs P. Verhagen, Emily Middendorp Guerra, Rosalie Joosten, Andrea Sacchetti, Wenjie Sun, Karishma Lila, +9 more
0citations -
GeneSurfer enables transcriptome-wide exploration and annotation of gene co-expression modules in 3D spatial transcriptomics data2025 iScience article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Chang Li, Julian Thijssen, Thomas Kroes, Ximaine R. van der Burg, Louise van der Weerd, Thomas Höllt, +1 more
1citations -
1381 Deciphering the role of immune cell communities in the initiation and progression of human colorectal cancer2024 Regular and Young Investigator Award Abstracts conference-abstract Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
S. Engels, Ana Marta Sequeira, Marieke E. Ijsselsteijn, Benedetta Manzato, Hao Dang, Jurjen J. Boonstra, +5 more
0citations