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PMIpred: a physics-informed web server for quantitative protein–membrane interaction prediction2024 Bioinformatics article Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access
Niek van Hilten, Nino Verwei, Jeroen Methorst, Carsten Nase, Andrius Bernatavicius, Herre Jelger Risselada
41citations -
PMIpred: A physics-informed web server for quantitative Protein-Membrane Interaction prediction2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access
Niek van Hilten, Nino Verwei, Jeroen Methorst, Carsten Nase, Andrius Bernatavicius, Herre Jelger Risselada
4citations -
cgNA+web : A Visual Interface to the cgNA+ Sequence-dependent Statistical Mechanics Model of Double-stranded Nucleic Acids2023 Journal of Molecular Biology article Biochemistry, Genetics and Molecular Biology DNA and Nucleic Acid Chemistry Open access
Rahul Sharma, Alessandro S. Patelli, Lennart de Bruin, John H. Maddocks
28citations -
CGMD Platform: Integrated Web Servers for the Preparation, Running, and Analysis of Coarse-Grained Molecular Dynamics Simulations2020 Molecules article Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Alessandro Marchetto, Zeineb Si Chaib, Carlo Alberto Rossi, Rui Pedro Ribeiro, Sergio Pantano, Giulia Rossetti, +1 more
21citations -
Comparison of virtual reality and web-based listening experiments on the perception in complex auralized environments2025 The Journal of the Acoustical Society of America article Computer Science Virtual Reality Applications and Impacts Open access
Rouben Rehman, Christian Dreier, Jonas Heck, Josep Llorca-Bofí, Michael Vorländer
1citations -
Hybrid MM/CG Webserver: Automatic Set Up of Molecular Mechanics/Coarse-Grained Simulations for Human G Protein-Coupled Receptor/Ligand Complexes2020 Frontiers in Molecular Biosciences article Biochemistry, Genetics and Molecular Biology Receptor Mechanisms and Signaling Open access
Jakob Schneider, Rui Pedro Ribeiro, Mercedes Alfonso‐Prieto, Paolo Carloni, Alejandro Giorgetti
9citations -
Semantic modeling of a cyber-physical biological production platform2022 IEEE International Conference on Emerging Technologies and Factory Automation (ETFA) conference-paper Computer Science Semantic Web and Ontologies
Simon Pieske, Werner Herfs, Martin Zenke, Simon Storms, Christian Brecher
2citations -
Memprot.GPCR-ModSim: modelling and simulation of membrane proteins in a nutshell2024 Bioinformatics article Biochemistry, Genetics and Molecular Biology Receptor Mechanisms and Signaling Open access
Remco L. van den Broek, Xabier Bello, Rebecca V Küpper, Gerard J. P. van Westen, Willem Jespers, Hugo Gutiérrez‐de‐Terán
5citations -
antiSMASH 6.0: improving cluster detection and comparison capabilities2021 Nucleic Acids Research article Medicine Microbial Natural Products and Biosynthesis Open access cited by 7 patents
Kai Blin, Alexander Kloosterman, Zachary Charlop–Powers, Gilles P. van Wezel, Marnix H. Medema, Tilmann Weber
2,597citations -
antiSMASH 7.0: new and improved predictions for detection, regulation, chemical structures and visualisation2023 Nucleic Acids Research article Medicine Microbial Natural Products and Biosynthesis Open access cited by 2 patents
Kai Blin, Hannah E. Augustijn, Zachary L. Reitz, Friederike Biermann, Mohammad M. Alanjary, Artem Fetter, +6 more
2,311citations -
iFeatureOmega: an integrative platform for engineering, visualization and analysis of features from molecular sequences, structural and ligand data sets2022 Nucleic Acids Research article Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access
Zhen Chen, Xuhan Liu, Pei Zhao, Chen Li, Yanan Wang, Fuyi Li, +7 more
102citations -
Systematic Characterization of Lysine Post-translational Modification Sites Using MUscADEL2022 Methods in molecular biology book-chapter Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics
Zhen Chen, Xuhan Liu, Fuyi Li, Chen Li, Tatiana T. Marquez‐Lago, André Leier, +4 more
2citations -
LiberTEM/LiberTEM: 0.7.12021 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Advanced Electron Microscopy Techniques and Applications Open access
Alexander Clausen, Dieter Weber, Karina Ruzaeva, Vadim Migunov, Anand Baburajan, Abijith Bahuleyan, +14 more
0citations -
LiberTEM/LiberTEM: 0.10.02022 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Advanced Electron Microscopy Techniques and Applications Open access
Alexander Clausen, Dieter Weber, M.P. Bryan, Karina Ruzaeva, Vadim Migunov, Anand Baburajan, +16 more
0citations -
LiberTEM/LiberTEM: 0.9.22022 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Advanced Electron Microscopy Techniques and Applications Open access
Alexander Clausen, Dieter Weber, M.P. Bryan, Karina Ruzaeva, Vadim Migunov, Anand Baburajan, +16 more
0citations -
LiberTEM/LiberTEM: 0.13.02023 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Advanced Electron Microscopy Techniques and Applications Open access
Alexander Clausen, Dieter Weber, M.P. Bryan, Karina Ruzaeva, Vadim Migunov, Anand Baburajan, +17 more
0citations -
LiberTEM/LiberTEM: 0.9.02022 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Advanced Electron Microscopy Techniques and Applications Open access
Alexander Clausen, Dieter Weber, M.P. Bryan, Karina Ruzaeva, Vadim Migunov, Anand Baburajan, +16 more
0citations -
LiberTEM/LiberTEM: 0.8.02021 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Advanced Electron Microscopy Techniques and Applications Open access
Alexander Clausen, Dieter Weber, Karina Ruzaeva, Vadim Migunov, Anand Baburajan, Abijith Bahuleyan, +16 more
0citations