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mzQuality: An Open-Source Software Tool for Quality Monitoring and Reporting of Targeted Mass Spectrometry Measurements2025 Journal of the American Society for Mass Spectrometry article Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access
Marielle van der Peet, Pascal Maas, Agnieszka B. Wegrzyn, Lieke Lamont, Ronan M. T. Fleming, Constance Bordes, +4 more
6citations -
Software Tool for Automatic Quantification of Sarcomere Length and Organization in Fixed and Live 2D and 3D Muscle Cell Cultures In Vitro2022 Current Protocols article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Jeroen M. Stein, Ulgu Arslan, Marnix Franken, Jessica C. de Greef, Siân E. Harding, Neda Mohammadi, +4 more
34citations -
GraspOS Deliverable D3.3: Tools and services2025 Zenodo (CERN European Organization for Nuclear Research) article Computer Science Distributed and Parallel Computing Systems Open access
Thanasis Vergoulis, Serafeim Chatzopoulos, Giulia Malaguarnera, Zacharoula Xenou, Leonidas Pispiringas, Harry Dimitropoulos, +13 more
0citations -
Methods Hub: A Community-Driven, Interactive Platform for Open-Source Computational Tools and Tutorials2026 Media and Communication article Decision Sciences Scientific Computing and Data Management Open access
Christina Viehmann, Johannes Kiesel, Arnim Bleier, Chung-hong Chan, Po-Chun Chang, Raniere Silva, +8 more
0citations -
Framework and tools for the simulation and analysis of the radio emission from air showers at IceCube2022 Journal of Instrumentation article Physics and Astronomy Astrophysics and Cosmic Phenomena Open access
R. Abbasi, M. Ackermann, J. Adams, J. A. Aguilar, M. Ahlers, M. Ahrens, +94 more
11citations -
DrugEx: Deep Learning Models and Tools for Exploration of Drug-Like Chemical Space2023 Journal of Chemical Information and Modeling article Computer Science Computational Drug Discovery Methods Open access
Martin Šícho, Sohvi Luukkonen, Helle W. van den Maagdenberg, Linde Schoenmaker, Olivier J. M. Béquignon, Gerard J. P. van Westen
40citations -
Bioimage management and analysis in Galaxy: Tools, workflows, training, and community practices2026 Journal of Microscopy article Decision Sciences Scientific Computing and Data Management Open access
Leonid Kostrykin, Riccardo Massei, Diana Chiang, Thomas Wollmann, Jean‐Marie Burel, David López Tabernero, +20 more
0citations -
Computational capabilities and compiler development for neutral atom quantum processors—connecting tool developers and hardware experts2024 Quantum Science and Technology article Computer Science Quantum Computing Algorithms and Architecture Open access cited by 1 patent
L. Schmid, David F. Locher, Manuel Rispler, Sebastian Blatt, Johannes Zeiher, Markus Michael Müller, +1 more
33citations