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Unsupervised protein embeddings outperform hand-crafted sequence and structure features at predicting molecular function2020 Bioinformatics article Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access cited by 2 patents
Amelia Villegas-Morcillo, Stavros Makrodimitris, Roeland C. H. J. van Ham, Angel Manuel Gomez, Marcel J. T. Reinders
137citations -
Hybrid MM/CG Webserver: Automatic Set Up of Molecular Mechanics/Coarse-Grained Simulations for Human G Protein-Coupled Receptor/Ligand Complexes2020 Frontiers in Molecular Biosciences article Biochemistry, Genetics and Molecular Biology Receptor Mechanisms and Signaling Open access
Jakob Schneider, Rui Pedro Ribeiro, Mercedes Alfonso‐Prieto, Paolo Carloni, Alejandro Giorgetti
9citations -
Cyclic Stretching Triggers Cell Orientation and Extracellular Matrix Remodeling in a Periodontal Ligament 3D In Vitro Model2023 Advanced Healthcare Materials article Biochemistry, Genetics and Molecular Biology Cellular Mechanics and Interactions Open access
Kuo‐Hui Chiu, Mert Karpat, Johannes Hahn, Kao‐Yuan Chang, Michael H. Weber, Michael F. Wolf, +2 more
22citations -
Lipid and protein dynamics of stacked and cation-depletion induced unstacked thylakoid membranes2021 BBA Advances article Biochemistry, Genetics and Molecular Biology Photosynthetic Processes and Mechanisms Open access
Faezeh Nami, Lijin Tian, Martina Huber, Roberta Croce, Anjali Pandit
11citations -
Supramolecular Engineering of Fluid Pressure in Filamentous Hybrid Double Network Hydrogels for 3D Chondrocyte Culture2026 Advanced Healthcare Materials article Biochemistry, Genetics and Molecular Biology Hydrogels: synthesis, properties, applications Open access
Ciqing Tong, Ying Chen, Merel L. Janssen, Isabel Sariol, Joeri A. J. Wondergem, Marijn van den Brink, +6 more
0citations -
Software Tool for Automatic Quantification of Sarcomere Length and Organization in Fixed and Live 2D and 3D Muscle Cell Cultures In Vitro2022 Current Protocols article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Jeroen M. Stein, Ulgu Arslan, Marnix Franken, Jessica C. de Greef, Siân E. Harding, Neda Mohammadi, +4 more
34citations -
The clinical and molecular spectrum of the KDM6B-related neurodevelopmental disorder2023 The American Journal of Human Genetics article Biochemistry, Genetics and Molecular Biology Genetics and Neurodevelopmental Disorders Open access
Dmitrijs Rots, Taryn E. Jakub, Crystal Keung, Adam Jackson, Siddharth Banka, Rolph Pfundt, +92 more
36citations -
Cover Picture: Proteomic Atomics Reveals a Distinctive Uracil‐5‐Methyltransferase (Mol. Inf. 5/2020)2020 Molecular Informatics article Computer Science Computational Drug Discovery Methods Open access
Subrata Pramanik, Manisha Thaker, Ananda Gopu Perumal, Rajasekaran Ekambaram, Naresh Poondla, Markus R. Schmidt, +3 more
0citations -
Phosphorylation of a chronic pain mutation in the voltage-gated sodium channel Nav1.7 increases voltage sensitivity2020 Journal of Biological Chemistry article Biochemistry, Genetics and Molecular Biology Ion channel regulation and function Open access
Clara M. Kerth, Petra A. I. Hautvast, Jannis Körner, Angelika Lampert, Jannis Meents
18citations -
Bi-allelic variants in CELSR3 are implicated in central nervous system and urinary tract anomalies2024 npj Genomic Medicine article Biochemistry, Genetics and Molecular Biology Genetic and Kidney Cyst Diseases Open access
Jil D. Stegmann, Jeshurun C. Kalanithy, Gabriel C. Dworschak, Nina Ishorst, Enrico Mingardo, Filipa M. Lopes, +64 more
4citations -
Investigating enzyme function by geometric matching of catalytic motifs2026 Protein Science article Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
R. Hackett, Ioannis G. Riziotis, Martin F. Larralde, António J. M. Ribeiro, Georg Zeller, Janet M. Thornton
0citations -
Genome-wide mapping of SARS-CoV-2 RNA structures identifies therapeutically-relevant elements2020 Nucleic Acids Research article Biochemistry, Genetics and Molecular Biology RNA and protein synthesis mechanisms Open access cited by 4 patents
Ilaria Manfredonia, Chandran Nithin, Almudena Ponce-Salvatierra, Pritha Ghosh, Tomasz K. Wirecki, Tycho Marinus, +5 more
323citations -
Investigating Enzyme Function by Geometric Matching of Catalytic Motifs2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Ioannis G. Riziotis, Martin F. Larralde, António J. M. Ribeiro, Georg Zeller, Janet M. Thornton
2citations -
Investigating enzyme function by geometric matching of catalytic motifs2026 Zenodo (CERN European Organization for Nuclear Research) software Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Ioannis G. Riziotis, Martin F. Larralde, António J. M. Ribeiro, Georg Zeller, Janet M. Thornton
0citations -
Circuit Topology Approach for the Comparative Analysis of Intrinsically Disordered Proteins2023 Journal of Chemical Information and Modeling article Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Barbara Scalvini, Vahid Sheikhhassani, Nadine van de Brug, Laurens W.H.J. Heling, Jeremy D. Schmit, Alireza Mashaghi
10citations