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Papers matching “transcriptomic data analysis” 86

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Comprehensive transcriptomic analysis of prostate cancer lung metastases
2024 PLoS ONE article Medicine Prostate Cancer Treatment and Research Open access

Alireza Azizi Saraji, Janine Stegmann-Frehse, Duan Kang, Anne Offermann, Danny David Jonigk, Mark Philipp Kuehnel, +3 more

2

citations
Biomarker identification for endometriosis as a target for real-time intraoperative fluorescent imaging: A new approach using transcriptomic analysis to broaden the search for potential biomarkers
2023 European Journal of Obstetrics & Gynecology and Reproductive Biology article Medicine Endometriosis Research and Treatment Open access

Fokkedien H.M.P. Tummers, Maria K. Bazelmans, Frank Willem Jansen, Mathijs D. Blikkendaal, Alexander L. Vahrmeijer, Peter J.K. Kuppen

7

citations
Transcriptomic Cross‐Species Analysis of Chronic Liver Disease Reveals Consistent Regulation Between Humans and Mice
2021 Hepatology Communications article Medicine Liver physiology and pathology Open access

Christian H. Holland, Ricardo O. Ramirez Flores, Maiju Myllys, Reham A. R. A. Hassan, Karolina Edlund, Ute Hofmann, +16 more

53

citations
A synthesis and subgroup analysis of the eosinophilic esophagitis tissue transcriptome
2023 Journal of Allergy and Clinical Immunology article Medicine Eosinophilic Esophagitis Open access

Justin Jacobse, Rachel E. Brown, Frank L. Revetta, Michael Fredrick Vaezi, Matthew A. Buendia, Christopher S. Williams, +5 more

23

citations
P412: TRANSCRIPTOMIC CLASSIFICATION, RISK STRATIFICATION AND THERAPY SELECTION IN AML
2023 HemaSphere article Medicine Acute Myeloid Leukemia Research Open access

Jeppe F. Severens, Onur Karakaslar, Elena Sánchez‐López, Redmar R. van den Berg, Hendrik Veelken, Marcel J. T. Reinders, +2 more

0

citations
Transcriptome analysis reveals tumor microenvironment changes in glioblastoma
2023 Cancer Cell article Medicine Glioma Diagnosis and Treatment Open access

Youri Hoogstrate, Kaspar Draaisma, Santoesha A. Ghisai, Levi van Hijfte, Nastaran Barin, Iris J. de Heer, +25 more

236

citations
Using a Network-Based Analysis Approach to Investigate the Involvement of S. aureus in the Pathogenesis of Granulomatosis with Polyangiitis
2023 International Journal of Molecular Sciences article Medicine Vasculitis and related conditions Open access

Gregory Rowland, Andreas Kronbichler, Rona Smith, David R.W. Jayne, Piet H. van der Graaf, Vijayalakshmi Chelliah

1

citations
Gene Regulation Network Analysis on Human Prostate Orthografts Highlights a Potential Role for the JMJD6 Regulon in Clinical Prostate Cancer
2021 Cancers article Medicine Prostate Cancer Treatment and Research Open access

Mario Cangiano, Magda Grudniewska, Mark J. Salji, Matti Nykter, Guido W Jenster, Alfonso Urbanucci, +5 more

10

citations
The In Vivo Transcriptomic Blueprint of Mycobacterium tuberculosis in the Lung
2021 Frontiers in Immunology article Medicine Tuberculosis Research and Epidemiology Open access

Mariateresa Coppola, Rachel Lai, Robert John Wilkinson, Tom H. M. Ottenhoff

9

citations
Multimodal analysis unveils tumor microenvironment heterogeneity linked to immune activity and evasion
2024 iScience article Medicine Cancer Immunotherapy and Biomarkers Open access

Óscar Lapuente-Santana, Gregor Sturm, J A Kant, Markus Außerhofer, Constantin Zackl, Maria Zopoglou, +6 more

16

citations
Single-Cell Multiomics Analysis of Human Kidney Diseases
2025 Journal of the American Society of Nephrology article Medicine Renal Diseases and Glomerulopathies

Turgay Saritas, Charlotte Boys, Christoph Kuppe, Sidrah Maryam, Tore Bleckwehl, Debashish Mohanta, +11 more

0

citations
Analysis of the RNA-Binding Protein Landscape in Porcine Kidneys Following Ischemia-Reperfusion Injury
2025 Journal of the American Society of Nephrology article Medicine Acute Kidney Injury Research

Roman-Ulrich Mueller, Steffen Hinrichs, Katrin Bohl, Francisco José Calheiros Craveiro Lopes, Heike Goebel, Berit Pollmann, +4 more

0

citations
Cluster Headache Genomewide Association Study and Meta‐Analysis Identifies Eight Loci and Implicates Smoking as Causal Risk Factor
2023 Annals of Neurology article Medicine Migraine and Headache Studies Open access

Bendik Slagsvold Winsvold, Aster V. E. Harder, Caroline Ran, Mona Ameri Chalmer, Carolina Dalmasso, Egil Ferkingstad, +87 more

59

citations
Cellular heterogeneity and transcriptomic profiles during intrahepatic cholangiocarcinoma initiation and progression
2022 Hepatology article Medicine Cholangiocarcinoma and Gallbladder Cancer Studies Open access

Tingjie Wang, Chuanrui Xu, Zhijing Zhang, Hua Jian Wu, Xiujuan Li, Yu Zhang, +7 more

53

citations
Metagenomic and transcriptomic investigation of pediatric acute liver failure cases reveals a common pathway predominated by monocytes
2025 mBio article Medicine Hepatitis B Virus Studies Open access

Ruben H J de Kleine, Ellen C. Carbo, Willem S. Lexmond, Xuewei W. Zhou, Hailiang Mei, Sander T. H. Bontemps, +12 more

7

citations
Proteomic, metabolomic, and transcriptomic examination of APOE transgenic mice
2020 Alzheimer s & Dementia article Medicine Alzheimer's disease research and treatments Open access

Eric G. Mohler, Janina S. Ried, Lamiaa Bahnassawy, Peter Reinhardt, Marco Rocha Curado, Margot H.M. Bakker, +6 more

1

citations
Recent Progress and Recommendations on Celiac Disease From the Working Group on Prolamin Analysis and Toxicity
2020 Frontiers in Nutrition article Medicine Celiac Disease Research and Management Open access

Katharina Anne Scherf, Carlo Catassi, Fernando Gabriel Chirdo, Paul J. Ciclitira, Conleth Feighery, Carmen Gianfrani, +7 more

57

citations
Single-cell and genetic multi-omics analysis combined with experiments confirmed the signature and potential targets of cuproptosis in hepatocellular carcinoma
2023 Frontiers in Cell and Developmental Biology article Medicine Ferroptosis and cancer prognosis Open access

Feng Cao, Yong Hua Qi, Wenyong Wu, Xutong Li, Chuang Yang

5

citations
Multimodal Data Integration Advances Longitudinal Prediction of the Naturalistic Course of Depression and Reveals a Multimodal Signature of Remission During 2-Year Follow-up
2023 Biological Psychiatry article Medicine Treatment of Major Depression Open access

Philippe C. Habets, Rajat Mani Thomas, Yuri Milaneschi, Rick Jansen, René Pool, Wouter J. Peyrot, +4 more

28

citations
Novel transcriptomic signatures associated with premature kidney allograft failure
2023 EBioMedicine article Medicine Renal Transplantation Outcomes and Treatments Open access cited by 1 patent

Petra Hrubá, Jǐŕı Kléma, Anh Vu Le, Eva Girmanová, Petra Mrázová, Annick Massart, +16 more

8

citations
Transcriptomic Signatures Associated With Regional Cortical Thickness Changes in Parkinson’s Disease
2021 Frontiers in Neuroscience article Medicine Parkinson's Disease Mechanisms and Treatments Open access

Arlin Keo, Oleh Dzyubachyk, Jeroen van der Grond, Jacobus Johannes van Hilten, Marcel J. T. Reinders, Ahmed Essam Mahfouz

8

citations
Identification and characterization of two consistent osteoarthritis subtypes by transcriptome and clinical data integration
2020 Lara D. Veeken article Medicine Osteoarthritis Treatment and Mechanisms Open access

Rodrigo Coutinho de Almeida, Ahmed Essam Mahfouz, Hailiang Mei, Evelyn Houtman, Wouter den Hollander, Jamie Soul, +8 more

36

citations
Integrative multiomics analysis of human atherosclerosis reveals a serum response factor‐driven network associated with intraplaque hemorrhage
2021 Clinical and Translational Medicine article Medicine Cerebrovascular and Carotid Artery Diseases Open access

Han Young Jin, Pieter Goossens, Peter J. Juhasz, Wouter J. Eijgelaar, Marco Manca, Joël Karel, +14 more

100

citations
A phenotype-driven data and drug repurposing strategy used to identify potential treatments targeting chondrocyte hypertrophy in osteoarthritis
2025 Biomedicine & Pharmacotherapy article Medicine Osteoarthritis Treatment and Mechanisms Open access

Judith Veldman, Mauricio N. Ferrao Blanco, Nicole Kops, Wendy J. L. M. Koevoet, Eric M. Bindels, Gregory van Beek, +5 more

1

citations
Early transcriptional responses of bronchial epithelial cells to whole cigarette smoke mirror those of in-vivo exposed human bronchial mucosa
2022 Respiratory Research article Medicine Smoking Behavior and Cessation Open access

Anne M. van der Does, Rashad Mohammad Mahbub, Dennis K. Ninaber, Senani N. H. Rathnayake, Wim Timens, Maarten van den Berge, +5 more

20

citations