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ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation2022 Journal of Structural Biology article Biochemistry, Genetics and Molecular Biology Advanced Electron Microscopy Techniques and Applications Open access
J. Jiménez de la Morena, Pablo Conesa, Yunior C. Fonseca, F.P. de Isidro-Gómez, David Herreros, Estrella Fernández-Giménez, +24 more
50citations -
mzQuality: An Open-Source Software Tool for Quality Monitoring and Reporting of Targeted Mass Spectrometry Measurements2025 Journal of the American Society for Mass Spectrometry article Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access
Marielle van der Peet, Pascal Maas, Agnieszka B. Wegrzyn, Lieke Lamont, Ronan M. T. Fleming, Constance Bordes, +4 more
6citations -
Left atrial function and the risk of new-onset atrial fibrillation in cardiac amyloidosis2023 European Heart Journal article Biochemistry, Genetics and Molecular Biology Amyloidosis: Diagnosis, Treatment, Outcomes
Robert Daniel Adam, Gabriela Neculae, Sorina Nicoleta BADELITA, Jan Stassen, Andreea Jercan, Monica Roşca, +9 more
1citations -
Software Tool for Automatic Quantification of Sarcomere Length and Organization in Fixed and Live 2D and 3D Muscle Cell Cultures In Vitro2022 Current Protocols article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Jeroen M. Stein, Ulgu Arslan, Marnix Franken, Jessica C. de Greef, Siân E. Harding, Neda Mohammadi, +4 more
34citations -
PeakPerformance - A tool for Bayesian inference-based fitting of LC-MS/MS peaks2024 The Journal of Open Source Software article Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access
Jochen Nießer, Michael Osthege, Eric von Lieres, Wolfgang Wiechert, Stephan Noack
1citations -
Ais: streamlining segmentation of cryo-electron tomography datasets2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Advanced Electron Microscopy Techniques and Applications Open access
Mart G.F. Last, Leoni Abendstein, Lenard M. Voortman, Thomas Harry Sharp
3citations -
Author response: Ais: streamlining segmentation of cryo-electron tomography datasets2024 peer-review Biochemistry, Genetics and Molecular Biology Advanced Electron Microscopy Techniques and Applications Open access
Mart G.F. Last, Leoni Abendstein, Lenard M. Voortman, Thomas Harry Sharp
0citations -
Author response: Ais: streamlining segmentation of cryo-electron tomography datasets2024 peer-review Biochemistry, Genetics and Molecular Biology Advanced Electron Microscopy Techniques and Applications Open access
Mart G.F. Last, Leoni Abendstein, Lenard M. Voortman, Thomas Harry Sharp
0citations -
Reviewer #3 (Public Review): Ais: streamlining segmentation of cryo-electron tomography datasets2024 peer-review Biochemistry, Genetics and Molecular Biology Advanced Electron Microscopy Techniques and Applications Open access
Mart G.F. Last, Leoni Abendstein, Lenard M. Voortman, Thomas Harry Sharp
0citations -
AstroECP: towards more practical Electron Channeling Contrast Imaging2025 PubMed Central article Biochemistry, Genetics and Molecular Biology Advanced Electron Microscopy Techniques and Applications Open access
M. Haroon Qaiser, Lukas Berners, Robin J. Scales, Tianbi Zhang, Jiří Dluhoš, Sandra Korte‐Kerzel, +1 more
0citations -
Automated assessment of human engineered heart tissues using deep learning and template matching for segmentation and tracking2023 Bioengineering & Translational Medicine article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
José M. Rivera‐Arbeláez, Danjel Keekstra, Carla Cofiño‐Fabrés, Tom Boonen, Milica Dostanić, Simone A. ten Den, +7 more
8citations -
iSODA: A Comprehensive Tool for Integrative Omics Data Analysis in Single- and Multi-Omics Experiments2025 Analytical Chemistry article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Damien Olivier‐Jimenez, Rico J. E. Derks, Oscar Harari, Carlos C Cruchaga, Muhammad Ali, Alessandro Ori, +5 more
10citations -
iSODA: A Comprehensive Tool for Integrative Omics Data Analysis in Single- and Multi-Omics Experiments2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Damien Olivier‐Jimenez, Rico J. E. Derks, Oscar Harari, Carlos C Cruchaga, Muhammad Asri Mohd Ali, Alessandro Ori, +5 more
0citations -
Proton pump inhibitors and gut microbiota dysbiosis: insights into the pathogenesis of ulcerative colitis2025 Frontiers in Microbiology article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Feng Cao, Shuo Liu, Yanwei Liu, Yong Xin Qi, Yunsheng Cheng, Yong Wang, +1 more
7citations -
Ultrastructural characterization of maturing iPSC ‐derived nephron structures upon transplantation2023 Microscopy Research and Technique article Biochemistry, Genetics and Molecular Biology Renal and related cancers Open access
Loes E. Wiersma, M. Cristina Avramut, Abraham J. Koster, Cathelijne W. van den Berg, Ton J. Rabelink
5citations -
FLAG-X: Hybrid machine learning workflows for automated gating of clinical flow cytometry data2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Paul Martini, Marziyeh Mohammadi, Michael Christoph Thrun, David B. Blumenthal, Stefan W. Krause
0citations -
HGVS Nomenclature 2024: improvements to community engagement, usability, and computability2024 Genome Medicine article Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Reece K. Hart, Ivo F.A.C. Fokkema, Marina T. DiStefano, Ros J. Hastings, Jeroen F. J. Laros, Rachel L. Taylor, +2 more
65citations -
MGcount: a total RNA-seq quantification tool to address multi-mapping and multi-overlapping alignments ambiguity in non-coding transcripts2022 BMC Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access cited by 2 patents
Andrea Hita, Gilles Brocart, Marc Rehmsmeier, Anna Alemany, Sol Schvartzman
17citations -
mzQuality: A tool for quality monitoring and reporting of targeted mass spectrometry measurements2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access
Marielle van der Peet, Pascal Maas, Agnieszka B. Wegrzyn, Lieke Lamont, Ronan M. T. Fleming, Amy C. Harms, +2 more
5citations