Papers matching “functional data analysis” 306
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Clinical, splicing, and functional analysis to classify BRCA2 exon 3 variants: Application of a points‐based ACMG/AMP approach2022 Human Mutation article Biochemistry, Genetics and Molecular Biology BRCA gene mutations in cancer Open access
Mads Thomassen, Romy L.S. Mesman, Thomas van Overeem Hansen, Mireia Menéndez, Maria Rossing, Ada Esteban‐Sánchez, +43 more
9citations -
iSODA: A Comprehensive Tool for Integrative Omics Data Analysis in Single- and Multi-Omics Experiments2025 Analytical Chemistry article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Damien Olivier‐Jimenez, Rico J. E. Derks, Oscar Harari, Carlos C Cruchaga, Muhammad Asri Mohd Ali, Alessandro Ori, +5 more
10citations -
iSODA: A Comprehensive Tool for Integrative Omics Data Analysis in Single- and Multi-Omics Experiments2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Damien Olivier‐Jimenez, Rico J. E. Derks, Oscar Harari, Carlos C Cruchaga, Muhammad Asri Mohd Ali, Alessandro Ori, +5 more
0citations -
Recommendations for the analysis of gene expression data to identify intrinsic differences between similar tissues2020 Genomics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Tooba Abbassi‐Daloii, Hermien E. Kan, Vered Raz, Peter A.C. ’t Hoen
16citations -
Fatty Acid and Alcohol Metabolism in Pseudomonas putida: Functional Analysis Using Random Barcode Transposon Sequencing2020 Applied and Environmental Microbiology article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Mitchell G. Thompson, Matthew R. Incha, Allison N. Pearson, Matthias Schmidt, William A. Sharpless, Christopher B. Eiben, +12 more
107citations -
Nitrogen Metabolism in Pseudomonas putida: Functional Analysis Using Random Barcode Transposon Sequencing2022 Applied and Environmental Microbiology article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Matthias Schmidt, Allison N. Pearson, Matthew R. Incha, Mitchell G. Thompson, Edward E. K. Baidoo, Ramu D. Kakumanu, +5 more
27citations -
Biotechnology data analysis training with Jupyter Notebooks2022 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Genetics, Bioinformatics, and Biomedical Research Open access
Ulf W. Liebal, Rafael Schimassek, Iris Broderius, Nicole Maaßen, Alina Vogelgesang, Philipp Weyers, +1 more
0citations -
Biotechnology data analysis training with Jupyter Notebooks2022 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Genetics, Bioinformatics, and Biomedical Research Open access
Ulf W. Liebal, Rafael Schimassek, Iris Broderius, Nicole Maaßen, Alina Vogelgesang, Philipp Weyers, +1 more
0citations -
Discovering fiber type architecture over the entire muscle using data‐driven analysis2021 Cytometry Part A article Biochemistry, Genetics and Molecular Biology Muscle Physiology and Disorders Open access
Davide Bindellini, Lenard M. Voortman, Cyriel Sebastiaan Olie, Maaike van Putten, Erik B. van den Akker, Vered Raz
6citations -
Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data2020 Genome biology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Christian H. Holland, Jovan Tanevski, Javier Perales-Patón, Jan G. Gleixner, Manu P. Kumar, Elisabetta Mereu, +6 more
367citations -
Large-scale meta-analysis and precision functional assays identify FANCM regions in which PTVs confer different risks for ER-negative and triple-negative breast cancer2025 The Breast article Biochemistry, Genetics and Molecular Biology BRCA gene mutations in cancer Open access
Amandine Billaud, Gisella Figlioli, Irene Casamassima, Violette Azzoni, Jahnavi Srivatsa, Mara Colombo, +93 more
2citations -
A thorough analysis of the contribution of experimental, derived and sequence-based predicted protein-protein interactions for functional annotation of proteins2020 PLoS ONE article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Stavros Makrodimitris, Marcel J. T. Reinders, Roeland C. H. J. van Ham
4citations -
RGT: a toolbox for the integrative analysis of high throughput regulatory genomics data2023 BMC Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Zhijian Li, Chao‐Chung Kuo, Fabio Ticconi, Mina Shaigan, Julia Gehrmann, Eduardo Gade Gusmao, +4 more
24citations -
RGT: a toolbox for the integrative analysis of high throughput regulatory genomics data2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access
Zhijian Li, Chao‐Chung Kuo, Fabio Ticconi, Mina Shaigan, Eduardo Gade Gusmao, Manuel Allhoff, +3 more
2citations -
Functional genomics analysis identifies T and NK cell activation as a driver of epigenetic clock progression2022 Genome biology article Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access cited by 1 patent
Thomas H. Jonkman, Koen F. Dekkers, Roderick C. Slieker, Crystal D. Grant, M. Arfan Ikram, Marleen M. J. van Greevenbroek, +5 more
71citations -
Pan-cancer functional analysis of somatic mutations in G protein-coupled receptors2022 Scientific Reports article Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access
Brandon J. Bongers, Marina Gorostiola González, X. Wang, Herman van Vlijmen, Willem Jespers, Hugo Gutiérrez‐de‐Terán, +3 more
18citations -
Functional analysis of the fatty acid and alcohol metabolism of Pseudomonas putida using RB-TnSeq2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Mitchell G. Thompson, Matthew R. Incha, Allison N. Pearson, Matthias Schmidt, William A. Sharpless, Christopher B. Eiben, +12 more
0citations -
A data-driven analysis of fiber type architecture over the entire muscle2020 preprint Biochemistry, Genetics and Molecular Biology Muscle Physiology and Disorders Open access
Davide Bindellini, Lenard M. Voortman, Cyriel Sebastiaan Olie, Maaike van Putten, Erik B. van den Akker, Vered Raz
0citations -
iFeatureOmega: an integrative platform for engineering, visualization and analysis of features from molecular sequences, structural and ligand data sets2022 Nucleic Acids Research article Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access
Zhen Chen, Xuhan Liu, Pei Zhao, Chen Li, Yanan Wang, Fuyi Li, +7 more
102citations -
Nitrogen metabolism in Pseudomonas putida : functional analysis using random barcode transposon sequencing2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Matthias Schmidt, Allison N. Pearson, Matthew R. Incha, Mitchell G. Thompson, Edward E. K. Baidoo, Ramu D. Kakumanu, +5 more
2citations -
GeneSurfer Enables Transcriptome-wide Exploration and Functional Annotation of Gene Co-expression Modules in 3D Spatial Transcriptomics Data2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Chang Li, Julian Thijssen, Thomas Kroes, Ximaine R. van der Burg, Louise van der Weerd, Thomas Höllt, +1 more
0citations -
Yeast9: A Consensus Yeast Metabolic Model Enables Quantitative Analysis of Cellular Metabolism By Incorporating Big Data2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Chengyu Zhang, Feiran Li, Cheng Wei Quan Eiden, William Taussig Scott, Ulf W. Liebal, Lars M. Blank, +8 more
8citations