SR-LLM Query Pipeline: reproducibility package for "An Agentic Learning Framework for Systematic Review Literature Search: A Retrospective PubMed Benchmarking Study"
Zenodo (CERN European Organization for Nuclear Research)
Abstract
Code, data and expected outputs for a two-stage LLM pipeline that generates PubMed Boolean queries for systematic reviews and reduces candidate records by exclusion-criteria filtering and MedCPT re-ranking. Version 2.0 adds the second-revision materials: the harmonized Stage C primary analysis (stageC_harmonized/), preserved historical Run1 Stage 2 records (run1_stage2/), and scripts for the revised figures and supplementary tables. The PubMed API response cache is deposited separately (doi:10.5281/zenodo.20392130).
Authors 3
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Leiden University Medical Center
Affiliation as printed
Department of Rheumatology, Leiden University Medical Center, Leiden, Netherlands
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Rachel Knevel Aachen
Newcastle University · Leiden University Medical Center
Affiliation as printed
Department of Rheumatology, Leiden University Medical Center, Leiden, Netherlands; Rheumatology, Newcastle University Translational and Clinical Research Institute, Newcastle upon Tyne, UK
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Erik B. van den Akker Aachen
Leiden University Medical Center · Delft University of Technology
Affiliation as printed
Leiden Computational Biology Centre, Leiden University Medical Center, Leiden, Netherlands; Delft Bioinformatics Lab, Delft University of Technology, Delft, Netherlands