monarch-initiative/monarch-app: v1.29.0

Zenodo (CERN European Organization for Nuclear Research)

Abstract

What's Changed Deduplicate Causal Genes / causes_disease in node header (#1328) by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1329 Update KG schema and regenerate model by @github-actions[bot] in https://github.com/monarch-initiative/monarch-app/pull/1325 Show dismech pathographs on disease and gene pages (#1318) by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1324 Surface Mondo related_to disease↔X relationships in node headers (#1326) by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1327 Add opt-in in-process DuckDB similarity backend (ducksim) by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1339 fix: re-raise caught ValidationError in parse_associations by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1323 Mondo node-header relationships: review follow-ups (#1326) by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1341 Update KG schema and regenerate model by @github-actions[bot] in https://github.com/monarch-initiative/monarch-app/pull/1340 fix(ducksim): dedupe entity-phenotype associations (jaccard/phenodigm 500s) by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1342 test(ducksim): invariant/metamorphic + API-contract tests (red until #1342) by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1343 feat(grounding): add optional CURIE prefix and biolink category filters by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1354 Make Claude Code Review on-demand instead of auto-firing on every PR/commit by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1363 Update KG schema and regenerate model by @github-actions[bot] in https://github.com/monarch-initiative/monarch-app/pull/1346 Add ClinGen linkout to disease Patient and Clinical Resources by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1344 [bot] Use the semanticsql CDN for the HP semsql download (off raw bbop-sqlite S3) by @kltm in https://github.com/monarch-initiative/monarch-app/pull/1362 fix(pathograph): render node text as svg instead of foreignObject by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1365 fix(search): format taxon labels as italic scientific names (#1350) by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1351 Update Resource Data by @github-actions[bot] in https://github.com/monarch-initiative/monarch-app/pull/1345 fix(pathograph): render for diseases/genes with no phenotype associations by @kevinschaper in https://github.com/monarch-initiative/monarch-app/pull/1366 fix: reflect GA4GH endorsement status on Phenopackets and Mondo pages by @varun-divya in https://github.com/monarch-initiative/monarch-app/pull/1338 New Contributors @kltm made their first contribution in https://github.com/monarch-initiative/monarch-app/pull/1362 Full Changelog: https://github.com/monarch-initiative/monarch-app/compare/v1.28.0...v1.29.0

Authors 22

1. varun_divya
2. Kevin Schaper
3. Vincent Rubinetti
   Affiliation as printed

   University of Colorado Department of Biomedical Informatics

4. Patrick Golden

   University of North Carolina at Chapel Hill

   Affiliation as printed

   UNC Chapel Hill

5. Sierra Moxon

   Lawrence Berkeley National Laboratory

   Affiliation as printed

   Lawrence Berkeley National Lab

6. Corey Cox
7. Harry Caufield

   Lawrence Berkeley National Laboratory

   Affiliation as printed

   Lawrence Berkeley National Laboratory

8. Nicolas Matentzoglu
   Affiliation as printed

   semanticly.ai

9. Faisal Alquaddoomi

   University of Colorado Anschutz

   Affiliation as printed

   CU Anschutz, DBMI

10. Carlo Kroll
11. Claude

    Anthropic (United States)

    Affiliation as printed

    @anthropics

12. madanucd
13. Nomi Harris

    Lawrence Berkeley National Laboratory

    Affiliation as printed

    Lawrence Berkeley National Laboratory

14. Justin Reese

    Lawrence Berkeley National Laboratory

    Affiliation as printed

    Lawrence Berkeley National Lab

15. Charles Tapley Hoyt Aachen

    RWTH Aachen University

    Affiliation as printed

    RWTH Aachen University

16. Sarah Gehrke
    Affiliation as printed

    Translational and Integrative Sciences Lab

17. Aaron Odell
18. Bradford Powell
19. Chris J Mungall

    Lawrence Berkeley National Laboratory

    Affiliation as printed

    Lawrence Berkeley National Laboratory

20. Monica Muñoz Torres

    University of Colorado Anschutz

    Affiliation as printed

    CU Anschutz

21. Patrick Kalita

    Lawrence Berkeley National Laboratory

    Affiliation as printed

    Lawrence Berkeley National Laboratory

22. kltm

    Lawrence Berkeley National Laboratory

    Affiliation as printed

    LBNL