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July 07, 2026 software Open access Aachen paper

RobokopU24/ORION: Release v2.0.0

Zenodo (CERN European Organization for Nuclear Research)

DOI: 10.5281/zenodo.21250713 Full text (OA) OpenAlex

Abstract

What's Changed ORION 2.0 by @EvanDietzMorris in https://github.com/RobokopU24/ORION/pull/409 Update Monarch KG parser to build full graph and support subgraph generation by @hina-shah in https://github.com/RobokopU24/ORION/pull/394 Bump urllib3 from 2.6.3 to 2.7.0 by @dependabot[bot] in https://github.com/RobokopU24/ORION/pull/410 Fix BindingDB affinity parsing by @cbizon in https://github.com/RobokopU24/ORION/pull/407 Rewrite DrugMechDB parser by @cbizon in https://github.com/RobokopU24/ORION/pull/408 Bump idna from 3.10 to 3.15 by @dependabot[bot] in https://github.com/RobokopU24/ORION/pull/411 Bump pydantic-settings from 2.13.1 to 2.14.2 by @dependabot[bot] in https://github.com/RobokopU24/ORION/pull/415 Preserve CTD taxon metadata by @cbizon in https://github.com/RobokopU24/ORION/pull/413 Create a ROBOKOP + Mouse graph. by @cbizon in https://github.com/RobokopU24/ORION/pull/414 Full Changelog: https://github.com/RobokopU24/ORION/compare/v1.3.3...v2.0.0

Authors 18

  1. Evan Morris

    Renaissance Computing Institute

    Affiliation as printed

    RENCI

  2. Phil Owen
  3. beaslejt
  4. Hong Yi

    Renaissance Computing Institute

    Affiliation as printed

    @RENCI @hydroshare @ResearchSoftwareInstitute @NCATS-Tangerine @RENCI-NER

  5. Kathleen Carter

    Renaissance Computing Institute

    Affiliation as printed

    RENCI

  6. beasleyjonm
  7. Olawumi Olasunkanmi

    University of North Carolina at Chapel Hill

    Affiliation as printed

    Grad Student @ UNC, Chapel Hill

  8. Jason Reilly

    Renaissance Computing Institute

    Affiliation as printed

    @RENCI

  9. cbizon
  10. Daniel Korn
  11. Shalki Shrivastava

    Lawrence Berkeley National Laboratory

    Affiliation as printed

    Lawrence Berkeley National Lab

  12. Bradford Powell
  13. Vibhor Gupta

    University of North Carolina at Chapel Hill

    Affiliation as printed

    University of North Carolina at Chapel Hill

  14. Cheng-Han Chung
  15. YaphetKG
  16. Charles Tapley Hoyt Aachen

    RWTH Aachen University

    Affiliation as printed

    RWTH Aachen University

  17. Max
  18. hina-shah

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