obophenotype/cell-ontology: 2026-06-08 Release
Zenodo (CERN European Organization for Nuclear Research)
Abstract
Release Notes 2026-06-08 Ontology content summary | Metric | Value | |:------------------------------------------------|--------:| | Number of subclasses of root | 3325 | | Number of annotations on CL terms | 17098 | | Number of synonyms | 7161 | | Number of unique references | 1960 | | Number of unique references in definitions | 2120 | | Number of relationships with CL term as subject | 5141 | | Number of cellxgene classes | 1026 | | Number of HRA classes | 655 | Nodes added to subset: 198 | Term | Subset | ----|----| | cervical dorsal root ganglion TRPV1 neuron (CL:4079008) | human_reference_atlas | | T follicular regulatory cell (CL:0009113) | added_by_HRA | | mucus secreting cell of trachea gland (CL:4033020) | added_by_HRA | | ON parasol ganglion cell (CL:4033052) | added_by_HRA | | endothelial cell of arteriole of lymph node (CL:4033001) | added_by_HRA | | kidney loop of Henle long descending thin limb outer medulla epithelial cell (CL:4030013) | added_by_HRA | | lumbar dorsal root ganglion Piezo2 neuron (CL:4079016) | human_reference_atlas | | lung resident memory CD8-positive, CD103-positive, alpha-beta T cell (CL:4033040) | added_by_HRA | | T cell zone reticular cell (CL:0009105) | added_by_HRA | | kidney connecting tubule alpha-intercalated cell (CL:4030020) | added_by_HRA | | cervical dorsal root ganglion peripherin neuron (CL:4079004) | human_reference_atlas | | goblet cell of epithelium of lobar bronchus (CL:4033009) | added_by_HRA | | invaginating midget bipolar cell (CL:4033034) | added_by_HRA | | luminal hormone-sensing cell of mammary gland (CL:4033058) | added_by_HRA | | cycling myeloid cell (CL:4033081) | added_by_HRA | | sacral dorsal root ganglion Nav1.9 neuron (CL:4079023) | human_reference_atlas | | cuboidal granulosa cell (CL:4033084) | added_by_HRA | | thymic fibroblast type 2 (CL:0009079) | added_by_HRA | | CD8aa(II) thymocyte (CL:0009069) | added_by_HRA | | thoracic dorsal root ganglion Nav1.7 neuron (CL:4079031) | human_reference_atlas | | diffuse bipolar 5 cell (CL:4033085) | added_by_HRA | | lung resident memory CD8-positive, alpha-beta T cell (CL:4033039) | added_by_HRA | | metallothionein-positive alveolar macrophage (CL:4033042) | added_by_HRA | | bronchiolar smooth muscle cell (CL:4033017) | added_by_HRA | | preplasmablast (CL:4033065) | added_by_HRA | | kidney connecting tubule principal cell (CL:4030018) | added_by_HRA | | myoepithelial cell of bronchus submucosal gland (CL:4033003) | added_by_HRA | | thoracic dorsal root ganglion CGRP neuron (CL:4079029) | human_reference_atlas | | medium field retinal amacrine cell (CL:0004252) | added_by_HRA | | cycling basal cell (CL:4033082) | added_by_HRA | | cycling macrophage (CL:4033076) | added_by_HRA | | serous secreting cell of bronchus submucosal gland (CL:4033005) | added_by_HRA | | diffuse bipolar 4 cell (CL:4033031) | added_by_HRA | | lumbar dorsal root ganglion endothelin-1 neuron (CL:4079012) | human_reference_atlas | | lung resident memory CD4-positive, alpha-beta T cell (CL:4033038) | added_by_HRA | | lung migratory dendritic cell (CL:4033045) | added_by_HRA | | cycling mononuclear phagocyte (CL:4033078) | added_by_HRA | | squamous granulosa cell (CL:4033083) | added_by_HRA | | diffuse bipolar 6 cell (CL:4033032) | added_by_HRA | | centroblast (CL:0009112) | added_by_HRA | | diffuse bipolar 2 cell (CL:4033028) | added_by_HRA | | cycling stromal cell (CL:4047001) | added_by_HRA | | renal medullary fibroblast (CL:4030022) | added_by_HRA | | airway submucosal gland collecting duct epithelial cell (CL:4033023) | added_by_HRA | | parasol ganglion cell of retina (CL:4023189) | added_by_HRA | | myo-medullary thymic epithelial cell (CL:0009075) | added_by_HRA | | lumbar dorsal root ganglion TRPV1 neuron (CL:4079019) | human_reference_atlas | | cycling plasma cell (CL:4047003) | added_by_HRA | | placental resident macrophage (CL:4033087) | added_by_HRA | | thymic fibroblast type 1 (CL:0009078) | added_by_HRA | | cervical dorsal root ganglion CGRP neuron (CL:4079000) | human_reference_atlas | | flat midget bipolar cell (CL:4033033) | added_by_HRA | | lymph node fibroblastic reticular cell (CL:0009102) | added_by_HRA | | B cell zone reticular cell (CL:0009104) | added_by_HRA | | corticomedullary thymic epithelial cell (CL:0009070) | added_by_HRA | | lung perichondrial fibroblast (CL:4033026) | added_by_HRA | | cycling natural killer cell (CL:4033071) | added_by_HRA | | thoracic dorsal root ganglion peripherin neuron (CL:4079033) | human_reference_atlas | | mural granulosa cell (CL:4033067) | added_by_HRA | | respiratory tract suprabasal cell (CL:4033048) | added_by_HRA | | cycling CD8-positive, alpha-beta T cell (CL:4033074) | added_by_HRA | | perichondrial fibroblast (CL:4033025) | added_by_HRA | | vein endothelial cell of respiratory system (CL:4033008) | added_by_HRA | | neural cell (CL:0002319) | human_reference_atlas | | kidney collecting duct alpha-intercalated cell (CL:4030015) | added_by_HRA | | giant bipolar cell (CL:4033035) | added_by_HRA | | lumbar dorsal root ganglion substance P neuron (CL:4079018) | human_reference_atlas | | lymphatic endothelial cell of trabecula (CL:0009109) | added_by_HRA | | subcapsular thymic epithelial cell (CL:0009077) | added_by_HRA | | lumbar dorsal root ganglion Nav1.7 neuron (CL:4079013) | human_reference_atlas | | midget ganglion cell of retina (CL:4023188) | added_by_HRA | | glycinergic-GABAergic amacrine cell (CL:4033091) | added_by_HRA | | lymphatic endothelial cell of medulla ceiling (CL:0009110) | added_by_HRA | | committed double negative thymocyte (Homo sapiens) (CL:0009082) | added_by_HRA | | kidney connecting tubule intercalated cell (CL:4030019) | added_by_HRA | | monocytoid B cell (CL:0009114) | added_by_HRA | | deuterosomal cell (CL:4033044) | added_by_HRA | | medullary reticular cell (CL:0009106) | added_by_HRA | | luminal adaptive secretory precursor cell of mammary gland (CL:4033057) | added_by_HRA | | early luteal cell (CL:4052046) | added_by_HRA | | myelinating glial cell (CL:4023154) | human_reference_atlas | | diffuse bipolar 1 cell (CL:4033027) | added_by_HRA | | inner wall Schlemm's canal endothelial cell (CL:4033098) | added_by_HRA | | epithelial cell of late distal convoluted tubule (CL:4030017) | added_by_HRA | | lactocyte (CL:0002325) | added_by_HRA | | specified double negative thymocyte (Homo sapiens) (CL:0009081) | added_by_HRA | | lumbar dorsal root ganglion Nav1.9 neuron (CL:4079014) | human_reference_atlas | | cervical dorsal root ganglion Nav1.9 neuron (CL:4079003) | human_reference_atlas | | endothelial cell of central vein of liver (CL:4033061) | added_by_HRA | | cycling alveolar macrophage (CL:4033077) | added_by_HRA | | uterine resident macrophage (CL:4033064) | added_by_HRA | | lumbar dorsal root ganglion peripherin neuron (CL:4079015) | human_reference_atlas | | mucus secreting cell of tracheobronchial tree submucosal gland (CL:4033037) | added_by_HRA | | secondary crest myofibroblast (CL:4033016) | added_by_HRA | | kidney loop of Henle long descending thin limb inner medulla epithelial cell (CL:4030014) | added_by_HRA | | airway submucosal gland duct multiciliated cell (CL:4033055) | added_by_HRA | | starburst amacrine cell (CL:0004232) | added_by_HRA | | lactocyte type 2 (CL:4033060) | added_by_HRA | | cycling type EC enteroendocrine cell (CL:4047004) | added_by_HRA | | airway submucosal gland duct basal cell (CL:4033024) | added_by_HRA | | lumbar dorsal root ganglion RET neuron (CL:4079017) | human_reference_atlas | | thoracic dorsal root ganglion TRPV1 neuron (CL:4079037) | human_reference_atlas | | cycling glial cell (CL:4047002) | added_by_HRA | | mucus secreting cell of bronchus submucosal gland (CL:4033022) | added_by_HRA | | sacral dorsal root ganglion peripherin neuron (CL:4079024) | human_reference_atlas | | cycling gamma-delta T cell (CL:4033072) | added_by_HRA | | atretic granulosa cell (CL:4033090) | added_by_HRA | | medullary thymic epithelial cell type 4 (CL:0009074) | added_by_HRA | | perivascular cell (CL:4033054) | added_by_HRA | | thoracic dorsal root ganglion RET neuron (CL:4079035) | human_reference_atlas | | lung megakaryocyte (CL:4033018) | added_by_HRA | | late luteal cell (CL:4052047) | added_by_HRA | | sacral dorsal root ganglion substance P neuron (CL:4079027) | human_reference_atlas | | ON midget ganglion cell (CL:4033046) | added_by_HRA | | centrocyte (CL:0009111) | added_by_HRA | | cycling endothelial cell of lymphatic vessel (CL:4033079) | added_by_HRA | | rearranging double negative thymocyte (Homo sapiens) (CL:0009083) | added_by_HRA | | cycling dendritic cell (CL:4033070) | added_by_HRA | | smooth muscle cell of large intestine smooth muscle circular layer (CL:4033011) | added_by_HRA | | OFFx cell (CL:4033036) | added_by_HRA | | diffuse bipolar 4b cell (CL:4033096) | added_by_HRA | | glycinergic amacrine cell (CL:4030028) | added_by_HRA | | lumbar dorsal root ganglion CGRP neuron (CL:4079011) | human_reference_atlas | | lung interstitial macrophage (CL:4033043) | added_by_HRA | | cycling B cell (CL:4033068) | added_by_HRA | | CD57-positive enterocyte (CL:4033092) | added_by_HRA | | medullary thymic epithelial cell type 3 (CL:0009073) | added_by_HRA | | prehypertrophic chondrocyte (CL:0020022) | human_reference_atlas | | pre-granulosa cell (CL:4033066) | added_by_HRA | | diffuse bipolar 3b cell (CL:4033030) | added_by_HRA | | epithelial cell of early distal convoluted tubule (CL:4030016) | added_by_HRA | | sacral dorsal root ganglion TRPV1 neuron (CL:4079028) | human_reference_atlas | | cycling neuroblast (sensu Vertebrata) (CL:4047005) | added_by_HRA | | diffuse bipolar 4a cell (CL:4033095) | added_by_HRA | | cervical dorsal root ganglion Nav1.7 neuron (CL:4079002) | human_reference_atla
Authors 28
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Lawrence Berkeley National Laboratory
Affiliation as printed
Lawrence Berkeley National Laboratory
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European Bioinformatics Institute · European Molecular Biology Laboratory · European Molecular Biology Laboratory
Affiliation as printed
EBI-EMBL
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Affiliation as printed
Critical Path Institute
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Affiliation as printed
www.virtualflybrain.org
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Affiliation as printed
semanticly.ai
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German BioImaging – Gesellschaft für Mikroskopie und Bildanalyse
Affiliation as printed
German BioImaging e.V
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University at Buffalo, State University of New York
Affiliation as printed
University at Buffalo
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German BioImaging – Gesellschaft für Mikroskopie und Bildanalyse
Affiliation as printed
German BioImaging GMB-eV
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Affiliation as printed
ARC Semantics
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Oregon Health & Science University
Affiliation as printed
Oregon Health and Science University
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Charles Tapley Hoyt Aachen
Affiliation as printed
RWTH Aachen University
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