geneontology/go-fastapi: v0.4.1

Zenodo (CERN European Organization for Nuclear Research)

Abstract

v0.4.1 Patch release on top of v0.4.0. Restores the ontology ribbon and the mygene→UniProtKB Alliance fallback — both broken by upstream data/API changes, not regressions in v0.4.0. No API surface change (same OpenAPI path-set; image tag 0.4.1). Fixed Ribbon 500 on goslim_agr (#165, #167). GOlr relabelled the molecular_function root GO:0003674 ("molecular_function" → "gene product or complex activity"), breaking get_ontology_subsets_by_id's annotation_class_label self-join → unguarded KeyError → 500 on every goslim_agr ribbon call (and /api/ontology/subset/{id}). Aspect roots are now resolved by stable GO ID (ASPECT_ROOTS), with guards so a future ontology label change can't take the widget down. No response-shape change. Alliance/mygene UniProtKB fallback (#159, #168). The Alliance of Genome Resources restructured GET /api/gene/{id} with no public API versioning: UniProtKB cross-references moved to gene.crossReferences[].referencedCurie and gene.gcrpCrossReference, away from the former top-level crossReferenceMap.other. gene_to_uniprot_from_alliance now reads the new gene_summary shape (e.g. HGNC:12139 / TRAV39 → UniProtKB:A0A0B4J263), plus deterministic mocked tests that lock the schema so a future silent change is caught in CI. Docs Devops centralization handoff notes for the operations-repo move (#164). — Release prepared by Claude Code agent on behalf of @kltm.

Authors 7

1. Sierra Moxon

   Lawrence Berkeley National Laboratory

   Affiliation as printed

   Lawrence Berkeley National Lab

2. kltm

   Lawrence Berkeley National Laboratory

   Affiliation as printed

   LBNL

3. abessiari
4. Charles Tapley Hoyt Aachen

   RWTH Aachen University

   Affiliation as printed

   RWTH Aachen University

5. Patrick Kalita

   Lawrence Berkeley National Laboratory

   Affiliation as printed

   Lawrence Berkeley National Laboratory

6. dustine32
7. Chris J Mungall

   Lawrence Berkeley National Laboratory

   Affiliation as printed

   Lawrence Berkeley National Laboratory