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Cyto R-CNN and CytoNuke Dataset: Towards reliable whole-cell segmentation in bright-field histological images2024 Computer Methods and Programs in Biomedicine article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Johannes Raufeisen, Kunpeng Xie, Fabian Hörst, Till A. Braunschweig, Jianning Li, Jens Kleesiek, +6 more
11citations -
microbeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation2022 PLoS ONE article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Tim Scherr, Johannes Seiffarth, Bastian Wollenhaupt, Oliver Neumann, Marcel P. Schilling, Dietrich Kohlheyer, +3 more
11citations -
microbeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Tim Scherr, Johannes Seiffarth, Bastian Wollenhaupt, Oliver Neumann, Marcel P. Schilling, Dietrich Kohlheyer, +3 more
1citations -
Distinct morphological features of malignant cells in large B-cell lymphoma identified by soft-segmentation in imaging-based spatial proteomics2025 Blood conference-abstract Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Troy Noordenbos, Marieke E. Ijsselsteijn, Noel de Miranda, Joost S.P. Vermaat, Mohammad Shahrokh Esfahani
0citations -
Automated detection and segmentation of non-small cell lung cancer computed tomography images2022 Nature Communications article Computer Science Medical Image Segmentation Techniques Open access
Sergey P. Primakov, Abdalla Ibrahim, Janita E. van Timmeren, Guangyao Wu, Simon Keek, Manon P. L. Beuque, +16 more
146citations -
Deep-learning-based multi-class segmentation for automated, non-invasive routine assessment of human pluripotent stem cell culture status2020 Computers in Biology and Medicine article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access cited by 1 patent
Tobias Piotrowski, Oliver Rippel, Andreas Elanzew, Bastian Nießing, Sebastian Stucken, Sven Jung, +6 more
50citations -
Reducing Manual Annotation Costs for Cell Segmentation by Upgrading Low-Quality Annotations2023 Lecture notes in computer science conference-paper Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques
Șerban Vădineanu, Daniël M. Pelt, Oleh Dzyubachyk, Kees Joost Batenburg
3citations -
Deformable hydrospheres and cell segmentation report on stresses generated by individual cells in tumoroids2026 Cell Reports Physical Science article Biochemistry, Genetics and Molecular Biology Cellular Mechanics and Interactions Open access
Rick Rodrigues de Mercado, Klara Beslmüller, Daan Vorselen, Erik H.J. Danen, Thomas Schmidt
1citations -
Segmentation of NKX2.5 Signal in Human Pluripotent Stem Cell-Derived Cardiomyocytes2023 Communications in computer and information science conference-paper Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Siem Jongsma, Verena Schwach, Simone A. ten Den, Robert C. J. J. Passier, Fons J. Verbeek, Lu Cao
1citations -
Mast Cell Distribution in Human Carotid Atherosclerotic Plaque Differs Significantly by Histological Segment2021 European Journal of Vascular and Endovascular Surgery article Medicine Cerebrovascular and Carotid Artery Diseases Open access
Joost M. Mekke, Daan H.J. Egberts, Farahnaz Waissi, Nathalie Timmerman, Ilze Bot, Johan Kuiper, +3 more
8citations -
Associations between spatial distribution of immune cell subsets and clinical outcomes in patients with advanced melanoma treated with immune checkpoint inhibitors: results from the PUMA challenge
Mark Schuiveling, Hong Liu, Daniel Eek, Martina Hanusová, Isabella A.J. van Duin, Laurens S. ter Maat, +30 more
0citations