obophenotype/cell-ontology: 2025-11-27 Release

Zenodo (CERN European Organization for Nuclear Research)

Abstract

Release Notes 2025-11-27 Ontology content summary | Metric | Value | |:------------------------------------------------|--------:| | Number of subclasses of root | 3214 | | Number of annotations on CL terms | 16504 | | Number of synonyms | 6821 | | Number of unique references | 1960 | | Number of unique references in definitions | 1978 | | Number of relationships with CL term as subject | 4754 | | Number of cellxgene classes | 955 | | Number of HRA classes | 515 | Classes added: 50 | Term | ----| | STRv D2 medium spiny neuron (Primate) (CL:4310138) | | SN-VTR-HTH GATA3-TCF7L2 GABA GABAergic interneuron (Primate) (CL:4310117) | | GPi Core neuron (Primate) (CL:4310095) | | SN GATA3-PAX8 GABA GABAergic interneuron (Primate) (CL:4310112) | | intrinsically photosensitive retinal ganglion cell (CL:0020014) | | transitional principal-intercalated cell of kidney collecting duct (CL:0020015) | | striatal SST-LYPD6-RSPO2 GABAergic interneuron (Primate) (CL:4310121) | | STRv D1 medium spiny neuron (Primate) (CL:4310136) | | GPin-BF cholinergic-GABAergic neuron (Primate) (CL:4310083) | | VTR-HTH Glut glutamatergic neuron of the basal ganglia (Primate) (CL:4310144) | | hair follicle isthmus-associated fibroblast (CL:0020012) | | prototypic neuron (Primate) (CL:4310094) | | SN SOX6 Dopa substantia nigra dopaminergic neuron (Primate) (CL:4310115) | | STRv D1-NUDAP medium spiny neuron (Primate) (CL:4310137) | | SN-VTR CALB1 Dopa substantia nigra dopaminergic neuron (Primate) (CL:4310109) | | SN SEMA5A GABA GABAergic interneuron (Primate) (CL:4310114) | | striatal SST-ADARB2 GABAergic interneuron (Primate) (CL:4310122) | | SN-VTR GAD2 Dopa dopaminergic neuron (Primate) (CL:4310111) | | SN EBF2 GABA GABAergic interneuron (Primate) (CL:4310110) | | STRd D1/D2-hybrid medium spiny neuron (Primate) (CL:4310131) | | striatal SST-CHODL GABAergic interneuron (Primate) (CL:4310123) | | STR TAC3-PLPP4 GABA TAC3-positive striatal interneuron (Primate) (CL:4310125) | | STR cholinergic-GABAergic neuron (Primate) (CL:4310135) | | GPi Shell neuron (Primate) (CL:4310096) | | Islands of Calleja granule cell (Primate) (CL:4310104) | | hair follicle associated fibroblast (CL:0020011) | | BF SKOR1 Glut glutamatergic neuron of the basal ganglia (Primate) (CL:4310088) | | STRd D1 Matrix medium spiny neuron (Primate) (CL:4310129) | | striosomal D1 medium spiny neuron (Primate) (CL:4310130) | | STR-BF TAC3-PLPP4-LHX8 GABA TAC3-positive striatal interneuron (Primate) (CL:4310126) | | STRd cholinergic-GABAergic neuron (Primate) (CL:4310128) | | OB Dopa-GABA neuron (Primate) (CL:4310147) | | GPe-NDB-SI LHX6-LHX8-GBX1 GABA GABAergic interneuron (Primate) (CL:4310100) | | striatal SST-RSPO2 GABAergic interneuron (Primate) (CL:4310124) | | AMY-SLEA-BNST D1 GABA GABAergic interneuron (Primate) (CL:4310145) | | striatal VIP GABAergic interneuron (Primate) (CL:4310127) | | OB FRMD7 GABA GABAergic neuron (Primate) (CL:4310148) | | hair follicle dermal stem cell (CL:4072103) | | STRd D2 Matrix medium spiny neuron (Primate) (CL:4310132) | | STRd D2 Striomat hybrid medium spiny neuron (Primate) (CL:4310133) | | AMY-SLEA-BNST GABA GABAergic interneuron (Primate) (CL:4310146) | | striatal LAMP5 LHX6 GABAergic interneuron (Primate) (CL:4310085) | | arkypallidal neuron (Primate) (CL:4310093) | | ZI-HTH GABA GABAergic interneuron (Primate) (CL:4310143) | | STH PVALB-PITX2 Glut glutamatergic neuron of the basal ganglia (Primate) (CL:4310118) | | dermal sheath fibroblast (CL:0020013) | | striatal LAMP5 CXCL14 GABAergic interneuron (Primate) (CL:4310084) | | striosomal D2 medium spiny neuron (Primate) (CL:4310134) | | SN GATA3-PVALB GABA GABAergic neuron (Primate) (CL:4310113) | | striatal pthlh-expressing interneuron (Primate) (CL:4310120) | Relationships added: 73 | Subject | Predicate | Object| ----|----|----| | striatal SST-LYPD6-RSPO2 GABAergic interneuron (Primate) (CL:4310121) | subClassOf (rdfs:subClassOf) | GABAergic interneuron (CL:0011005) | | STRd D1 Matrix medium spiny neuron (Primate) (CL:4310129) | subClassOf (rdfs:subClassOf) | matrix D1 medium spiny neuron (CL:4030043) | | STRd D2 Striomat hybrid medium spiny neuron (Primate) (CL:4310133) | subClassOf (rdfs:subClassOf) | cell (CL:0000000) | | hair follicle associated fibroblast (CL:0020011) | subClassOf (rdfs:subClassOf) | skin fibroblast (CL:0002620) | | GPi Core neuron (Primate) (CL:4310095) | subClassOf (rdfs:subClassOf) | internal globus pallidus core projecting neuron (CL:0020003) | | OB FRMD7 GABA GABAergic neuron (Primate) (CL:4310148) | subClassOf (rdfs:subClassOf) | cell (CL:0000000) | | STRd cholinergic-GABAergic neuron (Primate) (CL:4310128) | subClassOf (rdfs:subClassOf) | dorso-striatal cholinergic-GABAergic neuron (CL:0020007) | | GPi Shell neuron (Primate) (CL:4310096) | RO:0002162 | NCBITaxon:9443 | | SN GATA3-PAX8 GABA GABAergic interneuron (Primate) (CL:4310112) | subClassOf (rdfs:subClassOf) | GABAergic interneuron (CL:0011005) | | GPi Shell neuron (Primate) (CL:4310096) | subClassOf (rdfs:subClassOf) | internal globus pallidus shell projection neuron (CL:0020004) | | ZI-HTH GABA GABAergic interneuron (Primate) (CL:4310143) | subClassOf (rdfs:subClassOf) | GABAergic interneuron (CL:0011005) | | STR cholinergic-GABAergic neuron (Primate) (CL:4310135) | subClassOf (rdfs:subClassOf) | striatal cholinergic-GABAergic neuron (CL:0020008) | | SN SEMA5A GABA GABAergic interneuron (Primate) (CL:4310114) | subClassOf (rdfs:subClassOf) | GABAergic interneuron (CL:0011005) | | dermal sheath fibroblast (CL:0020013) | subClassOf (rdfs:subClassOf) | hair follicle associated fibroblast (CL:0020011) | | hair follicle dermal papilla cell (CL:0000346) | RO:0002215 | GO:0060638 | | fibroblast of the reticular layer of dermis (CL:2000096) | subClassOf (rdfs:subClassOf) | secretory cell (CL:0000151) | | VTR-HTH Glut glutamatergic neuron of the basal ganglia (Primate) (CL:4310144) | subClassOf (rdfs:subClassOf) | glutamatergic neuron of the basal ganglia (CL:4042040) | | SN-VTR GAD2 Dopa dopaminergic neuron (Primate) (CL:4310111) | subClassOf (rdfs:subClassOf) | cell (CL:0000000) | | SN SOX6 Dopa substantia nigra dopaminergic neuron (Primate) (CL:4310115) | subClassOf (rdfs:subClassOf) | cell (CL:0000000) | | arkypallidal neuron (Primate) (CL:4310093) | subClassOf (rdfs:subClassOf) | arkypallidal neuron (CL:0020010) | | SN-VTR CALB1 Dopa substantia nigra dopaminergic neuron (Primate) (CL:4310109) | subClassOf (rdfs:subClassOf) | cell (CL:0000000) | | STR TAC3-PLPP4 GABA TAC3-positive striatal interneuron (Primate) (CL:4310125) | subClassOf (rdfs:subClassOf) | TAC3-positive striatal interneuron (CL:4042001) | | STR-BF TAC3-PLPP4-LHX8 GABA TAC3-positive striatal interneuron (Primate) (CL:4310126) | subClassOf (rdfs:subClassOf) | TAC3-positive striatal interneuron (CL:4042001) | | hair follicle associated fibroblast (CL:0020011) | subClassOf (rdfs:subClassOf) | hair follicle cell (CL:0002559) | | SN EBF2 GABA GABAergic interneuron (Primate) (CL:4310110) | subClassOf (rdfs:subClassOf) | GABAergic interneuron (CL:0011005) | | STRv D1-NUDAP medium spiny neuron (Primate) (CL:4310137) | subClassOf (rdfs:subClassOf) | D1-NUDAP medium spiny neuron (CL:4030054) | | intrinsically photosensitive retinal ganglion cell (CL:0020014) | subClassOf (rdfs:subClassOf) | retinal ganglion cell (CL:0000740) | | GPin-BF cholinergic-GABAergic neuron (Primate) (CL:4310083) | subClassOf (rdfs:subClassOf) | GABA-Chol neuron (CL:0008061) | | intrinsically photosensitive retinal ganglion cell (CL:0020014) | subClassOf (rdfs:subClassOf) | photoreceptor cell (CL:0000210) | | dermal sheath fibroblast (CL:0020013) | RO:0002292 | PR:P16444 | | OB Dopa-GABA neuron (Primate) (CL:4310147) | subClassOf (rdfs:subClassOf) | OB-Dopa-GABA (CL:0020006) | | striatal SST-RSPO2 GABAergic interneuron (Primate) (CL:4310124) | subClassOf (rdfs:subClassOf) | sst GABAergic interneuron (CL:4023017) | | AMY-SLEA-BNST GABA GABAergic interneuron (Primate) (CL:4310146) | subClassOf (rdfs:subClassOf) | GABAergic interneuron (CL:0011005) | | prototypic neuron (Primate) (CL:4310094) | subClassOf (rdfs:subClassOf) | prototypic neuron (CL:0020009) | | fibroblast of the reticular layer of dermis (CL:2000096) | RO:0002292 | PR:Q15063 | | striosomal D2 medium spiny neuron (Primate) (CL:4310134) | subClassOf (rdfs:subClassOf) | striosomal D2 medium spiny neuron (CL:4030049) | | pvalb chandelier GABAergic interneuron (CL:4023036) | RO:0015004 | CLM:1000063 | | fibroblast of the reticular layer of dermis (CL:2000096) | RO:0003000 | GO:0005584 | | dermal sheath fibroblast (CL:0020013) | RO:0002215 | GO:0006936 | | striatal SST-CHODL GABAergic interneuron (Primate) (CL:4310123) | subClassOf (rdfs:subClassOf) | sst chodl GABAergic interneuron (CL:4023121) | | striatal LAMP5 CXCL14 GABAergic interneuron (Primate) (CL:4310084) | subClassOf (rdfs:subClassOf) | lamp5 GABAergic interneuron (CL:4023011) | | STRv D2 medium spiny neuron (Primate) (CL:4310138) | subClassOf (rdfs:subClassOf) | nucleus accumbens shell and olfactory tubercle D2 medium spiny neuron (CL:4030052) | | SN-VTR-HTH GATA3-TC

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