March 01, 2025 article Open access Deep learning in single-cell and spatial transcriptomics data analysis: advances and challenges from a data science perspective Briefings in Bioinformatics DOI: 10.1093/bib/bbaf136 Full text (OA) OpenAlex Authors 0 Author list not loaded yet. Cited by 0 stored of 74 References 4 Search Sort Most cited Newest Oldest Patent citations Title Any typearticle review book-chapter conference-paper preprint dissertation book dataset other Any fieldAgricultural and Biological Sciences Arts and Humanities Biochemistry, Genetics and Molecular Biology Business, Management and Accounting Chemical Engineering Chemistry Computer Science Decision Sciences Dentistry Earth and Planetary Sciences Economics, Econometrics and Finance Energy Engineering Environmental Science Health Professions Immunology and Microbiology Materials Science Mathematics Medicine Neuroscience Nursing Pharmacology, Toxicology and Pharmaceutics Physics and Astronomy Psychology Social Sciences Veterinary Open access Eleven grand challenges in single-cell data science 2020 Genome biology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 2 patents 1,504 citations Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data 2022 Nature Communications article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 1 patent 670 citations Single-cell landscape of innate and acquired drug resistance in acute myeloid leukemia 2024 Nature Communications article Medicine Acute Myeloid Leukemia Research Open access 34 citations An in-depth comparison of linear and non-linear joint embedding methods for bulk and single-cell multi-omics 2023 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access 12 citations 4 results