Cross-tissue immune cell analysis reveals tissue-specific features in humans

• SwarmMAP: swarm learning for decentralized cell type annotation in single cell sequencing data

  2026 npj Systems Biology and Applications article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  1

  citations
• The interaction between influenza vaccination and nasal pneumococcal colonization alters airway T cell responses and alveolar macrophage activation

  2026 medRxiv preprint Medicine Influenza Virus Research Studies Open access

  0

  citations
• A robust human airway organoid platform enables scalable expansion and trajectory mapping of pulmonary neuroendocrine cells

  2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Neonatal Respiratory Health Research Open access

  0

  citations
• Single-cell integration and multi-modal profiling reveals phenotypes and spatial organization of neutrophils in colorectal cancer

  2026 Cancer Cell article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  33

  citations
• A multicenter spatial transcriptomics atlas of human tuberculosis and non-tuberculous mycobacterial disease

  2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Tuberculosis Research and Epidemiology Open access

  1

  citations
• Progressive changes in phenotype, transcriptome and proliferation capacity characterise continued maturation and migration of intestinal cDCs in homeostasis

  2025 Nature Communications article Immunology and Microbiology Immunotherapy and Immune Responses Open access

  7

  citations
• Tumor evolution and immune microenvironment dynamics in primary and relapsed mantle cell lymphoma

  2025 Cell Reports Medicine article Medicine Lymphoma Diagnosis and Treatment Open access

  8

  citations
• Impact of Y chromosome loss on the risk of Parkinson's disease and progression

  2025 EBioMedicine article Medicine Parkinson's Disease Mechanisms and Treatments Open access

  5

  citations
• Vascular niches are the primary hotspots for aging within the multicellular architecture of cardiac tissue

  2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Cardiac Fibrosis and Remodeling Open access

  0

  citations
• Single-cell spatial transcriptomics unravels cell states and ecosystems associated with clinical response to immunotherapy

  2025 Journal for ImmunoTherapy of Cancer article Medicine Cancer Immunotherapy and Biomarkers Open access

  23

  citations
• Distinct immune cell infiltration patterns in pancreatic ductal adenocarcinoma (PDAC) exhibit divergent immune cell selection and immunosuppressive mechanisms

  2025 Nature Communications article Medicine Pancreatic and Hepatic Oncology Research Open access

  59

  citations
• SwarmMAP: Swarm Learning for Decentralized Cell Type Annotation in Single Cell Sequencing Data

  2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  1

  citations
• Single-cell transcriptional profiling of clear cell renal cell carcinoma reveals a tumor-associated endothelial tip cell phenotype

  2024 Communications Biology article Medicine Renal cell carcinoma treatment Open access

  49

  citations
• scDecorr - Feature decorrelation representation learning with domain adaptation enables self-supervised alignment of multiple single-cell experiments

  2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  0

  citations
• Interactions of the Immune System with Human Kidney Organoids

  2024 Transplant International article Medicine Renal Transplantation Outcomes and Treatments Open access cited by 1 patent

  26

  citations
• Tissue-resident memory T cells in human kidney transplants have alloreactive potential

  2024 American Journal of Transplantation article Medicine Renal Transplantation Outcomes and Treatments Open access

  4

  citations
• Virus-specific TRM cells of both donor and recipient origin reside in human kidney transplants

  2023 JCI Insight article Immunology and Microbiology T-cell and B-cell Immunology Open access

  10

  citations
• Single-cell immune multi-omics and repertoire analyses in pancreatic ductal adenocarcinoma reveal differential immunosuppressive mechanisms within different tumour microenvironments

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Pancreatic and Hepatic Oncology Research Open access

  4

  citations
• MASIv2 enables standardization and integration of multi-modal single-cell and spatial omics data with one general framework

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  1

  citations
• Best practices for single-cell analysis across modalities

  2023 Nature Reviews Genetics review Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 7 patents

  1,043

  citations

20 results