A combination of immune cell types identified through ensemble machine learning strategy detects altered profile in recurrent pregnancy loss: a pilot study

F&S Science, vol. 3, pp. 166–173

Abstract

OBJECTIVE: To compare the immunologic profiles of peripheral and menstrual blood (MB) of women who experience recurrent pregnancy loss and women without pregnancy complications. DESIGN: Explorative case-control study. Cross-sectional assessment of flow cytometry-derived immunologic profiles. SETTING: Academic medical center. PATIENT(S): Women who experienced more than 2 consecutive miscarriages. INTERVENTION(S): None. MAIN OUTCOME MEASURE(S): Flow cytometry-based immune profiles of uterine and systemic immunity (recurrent pregnancy loss, n = 18; control, n = 14) assessed by machine learning classifiers in an ensemble strategy, followed by recursive feature selection. RESULT(S): In peripheral blood, the combination of 4 cell types (nonswitched memory B cells, CD8+ T cells, CD56bright CD16- natural killer [NKbright] cells, and CD4+ effector T cells) classified samples correctly to their respective cohort. The identified classifying cell types in peripheral blood differed from the results observed in MB, where a combination of 6 cell types (Ki67+CD8+ T cells, (Human leukocyte antigen-DR+) regulatory T cells, CD27+ B cells, NKbright cells, regulatory T cells, and CD24HiCD38Hi B cells) plus age allowed for assigning samples correctly to their respective cohort. Based on the combination of these features, the average area under the curve of a receiver operating characteristic curve and the associated accuracy were >0.8 for both sample sources. CONCLUSION(S): A combination of immune subsets for cohort classification allows for robust identification of immune parameters with possible diagnostic value. The noninvasive source of MB holds several opportunities to assess and monitor reproductive health.

Authors 8

1. Marilen Benner

   Radboud University Nijmegen · Radboud University Medical Center · Radboud Institute for Molecular Life Sciences

   Affiliation as printed

   Radboud Institute of Molecular Life Sciences, Department of Laboratory Medicine, Laboratory of Medical Immunology, Radboud University Medical Center, Nijmegen, the Netherlands

2. Dorien Feyaerts

   Radboud University Nijmegen · Radboud University Medical Center · Radboud Institute for Molecular Life Sciences

   Affiliation as printed

   Radboud Institute of Molecular Life Sciences, Department of Laboratory Medicine, Laboratory of Medical Immunology, Radboud University Medical Center, Nijmegen, the Netherlands

3. Alejandro Lopez‐Rincon

   Utrecht University

   Affiliation as printed

   Department of Pharmaceutical Sciences, Utrecht University, Utrecht, the Netherlands

4. Olivier W.H. van der Heijden

   Radboud University Medical Center

   Affiliation as printed

   Department of Obstetrics and Gynecology, Radboud University Medical Center, Nijmegen, the Netherlands

5. Marie‐Louise van der Hoorn Aachen Department of Gynecology and Obstetrics

   Leiden University Medical Center

   Affiliation as printed

   Department of Gynecology and Obstetrics, Leiden University Medical Center, Leiden, the Netherlands

6. Irma Joosten

   Radboud University Nijmegen · Radboud University Medical Center · Radboud Institute for Molecular Life Sciences

   Affiliation as printed

   Radboud Institute of Molecular Life Sciences, Department of Laboratory Medicine, Laboratory of Medical Immunology, Radboud University Medical Center, Nijmegen, the Netherlands

7. Gerben Ferwerda

   Radboud University Nijmegen · Radboud University Medical Center · Radboud Institute for Molecular Life Sciences

   Affiliation as printed

   Radboud Institute of Molecular Life Sciences, Department of Laboratory Medicine, Laboratory of Medical Immunology, Radboud University Medical Center, Nijmegen, the Netherlands

8. Renate G.V.D. Molen corresponding

   Radboud University Nijmegen · Radboud University Medical Center · Radboud Institute for Molecular Life Sciences

   Affiliation as printed

   Radboud Institute of Molecular Life Sciences, Department of Laboratory Medicine, Laboratory of Medical Immunology, Radboud University Medical Center, Nijmegen, the Netherlands. Electronic address: Renate.vanderMolen@radboudumc.nl

   Radboud Institute of Molecular Life Sciences, Department of Laboratory Medicine, Laboratory of Medical Immunology, Radboud University Medical Center, Nijmegen, the Netherlands