Cell2location maps fine-grained cell types in spatial transcriptomics

• Spatial profiling of the spleen in mouse and human myelofibrosis reveals complement-driven immune-stromal interactions as a therapeutic target

  2026 Cell stem cell article Medicine Myeloproliferative Neoplasms: Diagnosis and Treatment Open access

  2

  citations
• A microenvironment-determined risk continuum refines subtyping in meningioma and reveals determinants of machine learning-based tumor classification

  2026 Nature Genetics article Medicine Meningioma and schwannoma management Open access

  10

  citations
• A multicenter spatial transcriptomics atlas of human tuberculosis and non-tuberculous mycobacterial disease

  2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Tuberculosis Research and Epidemiology Open access

  1

  citations
• Vascular Niches Are the Primary Hotspots in Cardiac Aging

  2025 Circulation Research article Medicine Cardiac Fibrosis and Remodeling Open access

  34

  citations
• Integrative single-cell and genetic profiling of human heart failure identifies targets for cardiomyocyte restoration

  2025 medRxiv preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  1

  citations
• Immunoregulatory Endothelial Cells Interact With T Cells After Myocardial Infarction

  2025 Circulation Research article Medicine Cardiac Fibrosis and Remodeling Open access

  14

  citations
• GeneSurfer enables transcriptome-wide exploration and annotation of gene co-expression modules in 3D spatial transcriptomics data

  2025 iScience article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  0

  citations
• Vascular niches are the primary hotspots for aging within the multicellular architecture of cardiac tissue

  2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Cardiac Fibrosis and Remodeling Open access

  0

  citations
• Encompassing view of spatial and single-cell RNA sequencing renews the role of the microvasculature in human atherosclerosis

  2024 Nature Cardiovascular Research article Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access

  67

  citations
• spacedeconv: deconvolution of tissue architecture from spatial transcriptomics

  2024 Research Square preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  4

  citations
• Spatial transcriptomic characterization of pathologic niches in IPF

  2024 Science Advances article Medicine Interstitial Lung Diseases and Idiopathic Pulmonary Fibrosis Open access cited by 1 patent

  106

  citations
• Multimodal analysis unveils tumor microenvironment heterogeneity linked to immune activity and evasion

  2024 iScience article Medicine Cancer Immunotherapy and Biomarkers Open access

  16

  citations
• GeneSurfer Enables Transcriptome-wide Exploration and Functional Annotation of Gene Co-expression Modules in 3D Spatial Transcriptomics Data

  2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  0

  citations
• Multimodal analysis unveils tumor microenvironment heterogeneity linked to immune activity and evasion

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Cancer Immunotherapy and Biomarkers Open access

  0

  citations
• Encompassing view of spatial and single-cell RNA-seq renews the role of the microvasculature in human atherosclerosis

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access

  5

  citations
• Spatial Transcriptomic Characterization of Novel Pathologic Niches in IPF

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Interstitial Lung Diseases and Idiopathic Pulmonary Fibrosis Open access

  1

  citations
• Epigenetic neural glioblastoma enhances synaptic integration and predicts therapeutic vulnerability

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Glioma Diagnosis and Treatment Open access

  10

  citations
• Best practices for single-cell analysis across modalities

  2023 Nature Reviews Genetics review Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 7 patents

  1,043

  citations
• ERS International Congress 2022: highlights from the Basic and Translational Science Assembly

  2023 ERJ Open Research article Medicine Asthma and respiratory diseases Open access

  7

  citations
• Spatial multi-omic map of human myocardial infarction

  2022 Nature article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  764

  citations

20 results