Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learning

• A real-time transformer pipeline for adult-mouse cardiomyocyte viability assessment in high-throughput toxicity screening

  2026 Biomedical Signal Processing and Control article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access

  0

  citations
• Frailty of older patients is not reflected in the melanoma tumor microenvironment and treatment response to immune checkpoint blockade therapy

  2026 Journal for ImmunoTherapy of Cancer article Medicine Cancer Immunotherapy and Biomarkers Open access

  0

  citations
• Spatial profiling of the spleen in mouse and human myelofibrosis reveals complement-driven immune-stromal interactions as a therapeutic target

  2026 Cell stem cell article Medicine Myeloproliferative Neoplasms: Diagnosis and Treatment Open access

  2

  citations
• Mapping human natural killer cell development in tonsil

  2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Immune Cell Function and Interaction Open access

  0

  citations
• Temporal and spatial composition of the tumor microenvironment predicts response to immune checkpoint inhibition in metastatic TNBC

  2026 Nature Cancer article Medicine Cancer Immunotherapy and Biomarkers Open access

  7

  citations
• Advancing Cardiovascular Research With Single-Cell and Spatial Transcriptomics

  2026 Circulation Research article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics

  12

  citations
• CellStyle: Improved Zero-Shot Cell Segmentation via Style Transfer

  2025 Lecture notes in computer science conference-paper Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques

  1

  citations
• Temporal and spatial composition of the tumor microenvironment predicts response to immune checkpoint inhibition

  2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Cancer Immunotherapy and Biomarkers Open access

  7

  citations
• Tracking One-in-a-Million: Large-Scale Benchmark for Microbial Single-Cell Tracking with Experiment-Aware Robustness Metrics

  2025 Lecture notes in computer science conference-paper Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access

  3

  citations
• From Feature Maps to Few-Shot Cell Segmentation

  2025 Lecture notes in computer science conference-paper Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques

  0

  citations
• Multidimensional profiling of cancer microenvironments in FFPE tissues by imaging mass cytometry

  2024 Methods in cell biology book-chapter Medicine Cancer Immunotherapy and Biomarkers

  2

  citations
• Reducing Manual Annotation Costs for Cell Segmentation by Upgrading Low-Quality Annotations

  2024 Journal of Imaging article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access

  6

  citations
• ObiWan-Microbi: OMERO-based integrated workflow for annotating microbes in the cloud

  2024 SoftwareX software-paper Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access

  11

  citations
• Spatial multi-omics: novel tools to study the complexity of cardiovascular diseases

  2024 Genome Medicine article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  106

  citations
• Mapping human natural killer cell development in pediatric tonsil by imaging mass cytometry and high-resolution microscopy

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Immune Cell Function and Interaction Open access

  5

  citations
• Reducing Manual Annotation Costs for Cell Segmentation by Upgrading Low-Quality Annotations

  2023 Lecture notes in computer science conference-paper Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques

  3

  citations
• Spatial multi-omic map of human myocardial infarction

  2022 Nature article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  764

  citations

17 results