Nebulosa recovers single-cell gene expression signals by kernel density estimation

• A single-nucleus transcriptomic atlas of human inner ear development

  2026 Nature Neuroscience article Neuroscience Hearing, Cochlea, Tinnitus, Genetics Open access

  0

  citations
• Distinct transcriptional programs define human IgG4 + memory B cells

  2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology T-cell and B-cell Immunology Open access

  0

  citations
• Erythropoietin receptor on cDC1s dictates immune tolerance

  2025 Nature article Immunology and Microbiology Immunotherapy and Immune Responses Open access

  15

  citations
• Ex vivo-generated lymphoid progenitors encompass both T cell and innate lymphoid cell fates

  2025 Frontiers in Immunology article Immunology and Microbiology T-cell and B-cell Immunology Open access

  0

  citations
• Drug combination prediction for cancer treatment using disease-specific drug response profiles and single-cell transcriptional signatures

  2025 eLife preprint Computer Science Computational Drug Discovery Methods Open access

  0

  citations
• Drug combination prediction for cancer treatment using disease-specific drug response profiles and single-cell transcriptional signatures

  2025 eLife preprint Computer Science Computational Drug Discovery Methods Open access

  0

  citations
• Targeting IRE1α reprograms the tumor microenvironment and enhances anti-tumor immunity in prostate cancer

  2024 Nature Communications article Biochemistry, Genetics and Molecular Biology Endoplasmic Reticulum Stress and Disease Open access

  40

  citations
• Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data

  2024 Nature Computational Science article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access

  19

  citations
• Epigenetic memory of coronavirus infection in innate immune cells and their progenitors

  2023 Cell article Immunology and Microbiology Immune responses and vaccinations Open access

  301

  citations
• A single-cell level comparison of human inner ear organoids with the human cochlea and vestibular organs

  2023 Cell Reports article Neuroscience Hearing, Cochlea, Tinnitus, Genetics Open access

  81

  citations
• Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access

  2

  citations
• Spatial multi-omic map of human myocardial infarction

  2022 Nature article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  764

  citations
• Drug combination prediction for cancer treatment using disease-specific drug response profiles and single-cell transcriptional signatures

  2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science Computational Drug Discovery Methods Open access

  4

  citations
• rPanglaoDB: an R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database

  2021 Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  17

  citations
• rPanglaoDB: an R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database

  2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  0

  citations

15 results