scMC learns biological variation through the alignment of multiple single-cell genomics datasets

• Temporal dynamics of collateral RNA cleavage by LbuCas13a in human cells

  2026 Communications Biology article Biochemistry, Genetics and Molecular Biology CRISPR and Genetic Engineering Open access

  11

  citations
• GeneSurfer enables transcriptome-wide exploration and annotation of gene co-expression modules in 3D spatial transcriptomics data

  2025 iScience article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  0

  citations
• gsQTL: Associating genetic risk variants with gene sets by exploiting their shared variability

  2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access

  0

  citations
• GeneSurfer Enables Transcriptome-wide Exploration and Functional Annotation of Gene Co-expression Modules in 3D Spatial Transcriptomics Data

  2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  0

  citations
• Fungal-bacterial gut microbiota interactions in patients with Clostridioides difficile colonisation and infection

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Clostridium difficile and Clostridium perfringens research Open access

  0

  citations
• Competition for iron shapes metabolic antagonism between Bacillus subtilis and Pseudomonas

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access

  2

  citations
• MASIv2 enables standardization and integration of multi-modal single-cell and spatial omics data with one general framework

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  1

  citations
• SpaceWalker: Interactive Gradient Exploration for Spatial Transcriptomics Data

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  2

  citations
• Capturing the dynamics of microbiomes using individual-specific networks

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access

  0

  citations
• Temporal dynamics of collateral RNA cleavage by LbuCas13a in human cells

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology CRISPR and Genetic Engineering Open access

  5

  citations
• baseLess: lightweight detection of sequences in raw MinION data

  2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access

  4

  citations
• Multi-ancestry genome-wide association study improves resolution of genes, pathways and pleiotropy for lung function and chronic obstructive pulmonary disease

  2022 medRxiv preprint Medicine Chronic Obstructive Pulmonary Disease (COPD) Research Open access

  7

  citations
• MOJITOO: a fast and universal method for integration of multimodal single cell data

  2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  3

  citations

13 results

• Eleven grand challenges in single-cell data science

  2020 Genome biology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 2 patents

  1,504

  citations

1 result