Predicting cell-to-cell communication networks using NATMI

• GraphComm predicts cell cell communication using a graph based deep learning method in single cell RNA sequencing data

  2025 Scientific Reports article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  6

  citations
• Advances and challenges in cell–cell communication inference: a comprehensive review of tools, resources, and future directions

  2025 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  39

  citations
• Studying the Pulmonary Endothelium in Health and Disease: An Official American Thoracic Society Workshop Report

  2024 American Journal of Respiratory Cell and Molecular Biology article Medicine Cell Adhesion Molecules Research Open access

  11

  citations
• Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data

  2022 Nature Communications article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 1 patent

  670

  citations
• Cell-cell Communication Inference from Single-cell RNA-Seq Data: a Comparison of Methods and Resources

  2021 Research Square preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  3

  citations
• Comparison of Resources and Methods to infer Cell-Cell Communication from Single-cell RNA Data

  2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  23

  citations
• Integrated intra‐ and intercellular signaling knowledge for multicellular omics analysis

  2021 Molecular Systems Biology article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  406

  citations

7 results