nnU-Net: a self-configuring method for deep learning-based biomedical image segmentation

• Automated segmentation of the sacro-iliac joints, posterior spinal joints and discovertebral units on low-dose computed tomography for Na[18F]F PET lesion detection in spondyloarthritis patients

  2025 EJNMMI Physics article Computer Science Medical Image Segmentation Techniques Open access

  5

  citations
• Correlative In Situ Cryo-ET Reveals Cellular and Viral Remodeling Associated with Selective HIV-1 Core Nuclear Import

  2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology HIV Research and Treatment Open access

  4

  citations
• Dealing with segmentation errors in needle reconstruction for MRI-guided brachytherapy

  2025 SPIE Medical Imaging: Image-Guided Procedures, Robotic Interventions, and Modeling conference-paper Computer Science Medical Image Segmentation Techniques Open access

  0

  citations
• GBM-Reservoir: Brain tumor (Glioblastoma Multiforme) MRI dataset collection with ground truth segmentation masks

  2025 Data in Brief data-paper Neuroscience Brain Tumor Detection and Classification Open access

  2

  citations
• Uncertainty Quantification in Machine Learning Based Segmentation: A Post-Hoc Approach for Left Ventricle Volume Estimation in MRI

  2025 SIAM/ASA Journal on Uncertainty Quantification article Computer Science Medical Image Segmentation Techniques Open access

  1

  citations
• Comparative Analysis of nnUNet and MedNeXt for Head and Neck Tumor Segmentation in MRI-Guided Radiotherapy

  2025 Lecture notes in computer science conference-paper Computer Science Medical Image Segmentation Techniques Open access

  4

  citations
• Three-dimensional distensibility of the aorta derived from four-dimensional cardiovascular magnetic resonance in young and middle-aged adults with Marfan syndrome

  2025 Journal of Cardiovascular Magnetic Resonance article Biochemistry, Genetics and Molecular Biology Connective tissue disorders research Open access

  3

  citations
• Technical and clinical validation of a novel deep learning-based white matter hyperintensity segmentation tool

  2025 Cerebral Circulation - Cognition and Behavior article Computer Science Medical Image Segmentation Techniques Open access

  6

  citations
• From Diagnostic CT to DTI Tractography Labels: Using Deep Learning for Corticospinal Tract Injury Assessment and Outcome Prediction in Intracerebral Haemorrhage

  2025 Lecture notes in computer science conference-paper Medicine Intracerebral and Subarachnoid Hemorrhage Research

  2

  citations
• MedShapeNet – a large-scale dataset of 3D medical shapes for computer vision

  2024 Biomedizinische Technik/Biomedical Engineering article Engineering 3D Shape Modeling and Analysis Open access

  36

  citations
• Deep learning for 3D vascular segmentation in hierarchical phase contrast tomography: a case study on kidney

  2024 Scientific Reports article Computer Science Medical Image Segmentation Techniques Open access cited by 1 patent

  25

  citations
• External validation of a deep learning model for automatic segmentation of skeletal muscle and adipose tissue on abdominal CT images

  2024 British Journal of Radiology article Computer Science Medical Image Segmentation Techniques Open access

  22

  citations
• Generalizable Deep Learning for the Detection of Incomplete and Complete Retinal Pigment Epithelium and Outer Retinal Atrophy: A MACUSTAR Report

  2024 Translational Vision Science & Technology article Medicine Retinal Imaging and Analysis Open access

  7

  citations
• Combining Radiomics and Autoencoders to Distinguish Benign and Malignant Breast Tumors on US Images

  2024 Radiology article Medicine Radiomics and Machine Learning in Medical Imaging Open access

  35

  citations
• Overcoming data scarcity in biomedical imaging with a foundational multi-task model

  2024 Nature Computational Science article Computer Science Domain Adaptation and Few-Shot Learning Open access

  73

  citations
• Generating synthetic computed tomography for radiotherapy: SynthRAD2023 challenge report

  2024 Medical Image Analysis article Physics and Astronomy Advanced Radiotherapy Techniques Open access cited by 1 patent

  69

  citations
• Automated Dentate Nucleus Segmentation from QSM Images Using Deep Learning

  2024 medRxiv preprint Computer Science Medical Image Segmentation Techniques Open access

  0

  citations
• UNITY: A low-field magnetic resonance neuroimaging initiative to characterize neurodevelopment in low and middle-income settings

  2024 Developmental Cognitive Neuroscience article Medicine Advanced MRI Techniques and Applications Open access

  44

  citations
• Generalisation of Segmentation Using Generative Adversarial Networks

  2024 IEEE International Symposium on Biomedical Imaging (ISBI) conference-paper Neuroscience Brain Tumor Detection and Classification

  3

  citations
• Cooperative AI training for cardiothoracic segmentation in computed tomography: An iterative multi-center annotation approach

  2024 European Journal of Radiology article Computer Science Medical Image Segmentation Techniques Open access

  4

  citations

• batchgenerators - a python framework for data augmentation

  2020 Zenodo (CERN European Organization for Nuclear Research) software Computer Science Medical Image Segmentation Techniques Open access

  59

  citations

1 result