March 05, 2020 article Open access Trajectory-based differential expression analysis for single-cell sequencing data Nature Communications DOI: 10.1038/s41467-020-14766-3 Full text (OA) OpenAlex Authors 0 Author list not loaded yet. Cited by 20 stored of 915 Search Sort Most cited Newest Oldest Patent citations Title Any typearticle review book-chapter conference-paper preprint dissertation book dataset other Any fieldAgricultural and Biological Sciences Arts and Humanities Biochemistry, Genetics and Molecular Biology Business, Management and Accounting Chemical Engineering Chemistry Computer Science Decision Sciences Dentistry Earth and Planetary Sciences Economics, Econometrics and Finance Energy Engineering Environmental Science Health Professions Immunology and Microbiology Materials Science Mathematics Medicine Neuroscience Nursing Pharmacology, Toxicology and Pharmaceutics Physics and Astronomy Psychology Social Sciences Veterinary Open access Cell-type-specific damage scores reveal kidney and liver disease trajectories in single-cell and spatial transcriptomics 2026 Cell Genomics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access 1 citations Trypanosoma cruzi cell atlas as a single-cell resource for understanding parasite population heterogeneity and differentiation 2026 Nature Communications article Medicine Trypanosoma species research and implications Open access 8 citations Single-cell integration and multi-modal profiling reveals phenotypes and spatial organization of neutrophils in colorectal cancer 2026 Cancer Cell article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access 33 citations PILOT-GM-VAE: patient-level analysis of single-cell disease atlas with optimal transport of Gaussian mixture variational autoencoders 2025 Briefings in Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access 0 citations The pioneer factor, ETV2, regulates networks to specify the embryonic endothelial lineage 2025 Cardiovascular Research article Biochemistry, Genetics and Molecular Biology Developmental Biology and Gene Regulation Open access 4 citations Ex vivo-generated lymphoid progenitors encompass both T cell and innate lymphoid cell fates 2025 Frontiers in Immunology article Immunology and Microbiology T-cell and B-cell Immunology Open access 0 citations Endothelial-to-mesenchymal transition gene signature derived from single-cell transcriptomics of human atherosclerotic tissue associates with stable plaque histological characteristics 2025 Vascular Pharmacology article Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access 15 citations PILOT-GM-VAE: Patient-Level Analysis of single cell Disease Atlas with Optimal Transport of Gaussian Mixture Variational Autoencoders 2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access 0 citations Single-Cell Resolution of Cellular Damage Illuminates Disease Progression 2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access 1 citations Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT) 2023 Molecular Systems Biology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access 36 citations Identification of endothelial-to-mesenchymal transition gene signatures in single-cell transcriptomics of human atherosclerotic tissue 2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access 6 citations IL-7 receptor signaling drives human B-cell progenitor differentiation and expansion 2023 Blood article Immunology and Microbiology T-cell and B-cell Immunology Open access 60 citations Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT) 2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access 8 citations Dissecting CD8+ T cell pathology of severe SARS-CoV-2 infection by single-cell immunoprofiling 2022 Frontiers in Immunology article Medicine SARS-CoV-2 and COVID-19 Research Open access 23 citations Single-cell transcriptomics in bone marrow delineates CD56dimGranzymeK+ subset as intermediate stage in NK cell differentiation 2022 Frontiers in Immunology article Immunology and Microbiology Immune Cell Function and Interaction Open access 17 citations QPCTL regulates macrophage and monocyte abundance and inflammatory signatures in the tumor microenvironment 2022 OncoImmunology article Immunology and Microbiology Immune cells in cancer Open access cited by 12 patents 20 citations Dissecting CD8+ T cell pathology of severe SARS-CoV-2 infection by single-cell epitope mapping 2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine SARS-CoV-2 and COVID-19 Research Open access 7 citations Spatiotemporal heterogeneity of glioblastoma is dictated by microenvironmental interference 2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Glioma Diagnosis and Treatment Open access 12 citations Spatiotemporal heterogeneity of glioblastoma is dictated by microenvironmental interference 2021 Research Square preprint Medicine Glioma Diagnosis and Treatment Open access 4 citations Eleven grand challenges in single-cell data science 2020 Genome biology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 2 patents 1,504 citations 20 results References 0