Orchestrating single-cell analysis with Bioconductor

• Pathway-centric visualization of cell-cell communication in single-cell transcriptomics data

  2026 npj Systems Biology and Applications article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  0

  citations
• Trypanosoma cruzi cell atlas as a single-cell resource for understanding parasite population heterogeneity and differentiation

  2026 Nature Communications article Medicine Trypanosoma species research and implications Open access

  8

  citations
• Cytotoxic T cell recognition of α-synuclein drives pathogenic immune responses in multiple system atrophy

  2026 Proceedings of the National Academy of Sciences article Medicine Parkinson's Disease Mechanisms and Treatments Open access

  1

  citations
• Integrin α1β1 Promotes Interstitial Fibrosis and Cyst Growth in a Mouse Model of Polycystic Kidney Disease

  2025 Journal of the American Society of Nephrology article Biochemistry, Genetics and Molecular Biology Genetic and Kidney Cyst Diseases Open access

  3

  citations
• NK2R control of energy expenditure and feeding to treat metabolic diseases

  2024 Nature article Neuroscience Regulation of Appetite and Obesity Open access

  46

  citations
• Integrin alpha1 beta1 promotes interstitial fibrosis in a mouse model of polycystic kidney disease

  2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genetic and Kidney Cyst Diseases Open access

  2

  citations
• spacedeconv: deconvolution of tissue architecture from spatial transcriptomics

  2024 Research Square preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  4

  citations
• Distinct spatiotemporal dynamics of CD8+ T cell-derived cytokines in the tumor microenvironment

  2024 Cancer Cell article Medicine Cancer Immunotherapy and Biomarkers Open access

  92

  citations
• Best practices for single-cell analysis across modalities

  2023 Nature Reviews Genetics review Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 7 patents

  1,043

  citations
• Single-cell transcriptomics in bone marrow delineates CD56dimGranzymeK+ subset as intermediate stage in NK cell differentiation

  2022 Frontiers in Immunology article Immunology and Microbiology Immune Cell Function and Interaction Open access

  17

  citations
• Tertiary lymphoid structures critical for prognosis in endometrial cancer patients

  2022 Nature Communications article Medicine Endometrial and Cervical Cancer Treatments Open access

  147

  citations
• Experimental and computational technologies to dissect the kidney at the single-cell level

  2020 Nephrology Dialysis Transplantation article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  12

  citations

12 results