The art of using t-SNE for single-cell transcriptomics

• Controlled human hookworm infection remodels plasmacytoid dendritic cells and regulatory T cells towards profiles seen in natural infections in endemic areas

  2024 Nature Communications article Immunology and Microbiology Parasites and Host Interactions Open access

  7

  citations
• Expanding Extender Substrate Selection for Unnatural Polyketide Biosynthesis by Acyltransferase Domain Exchange within a Modular Polyketide Synthase

  2023 Journal of the American Chemical Society article Medicine Microbial Natural Products and Biosynthesis Open access cited by 1 patent

  35

  citations
• Artificial intelligence for precision medicine in autoimmune liver disease

  2022 Frontiers in Immunology article Medicine Liver Diseases and Immunity Open access

  31

  citations
• Combi-seq for multiplexed transcriptome-based profiling of drug combinations using deterministic barcoding in single-cell droplets

  2022 Nature Communications article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 4 patents

  27

  citations
• Ovarian cancer immunogenicity is governed by a narrow subset of progenitor tissue-resident memory T cells

  2022 Cancer Cell article Medicine Cancer Immunotherapy and Biomarkers Open access cited by 1 patent

  184

  citations
• bletl ‐ A Python package for integrating BioLector microcultivation devices in the Design‐Build‐Test‐Learn cycle

  2022 Engineering in Life Sciences software-paper Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access

  42

  citations
• A framework for employing longitudinally collected multicenter electronic health records to stratify heterogeneous patient populations on disease history

  2022 Journal of the American Medical Informatics Association article Computer Science Machine Learning in Healthcare Open access

  13

  citations
• Deep Recursive Embedding for High-Dimensional Data

  2021 IEEE Transactions on Visualization and Computer Graphics article Computer Science Face and Expression Recognition Open access cited by 1 patent

  13

  citations
• Combi-Seq: Multiplexed transcriptome-based profiling of drug combinations using deterministic barcoding in single-cell droplets

  2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  4

  citations
• Ovarian Cancer Immunogenicity is Governed by a Narrow Subset of Progenitor Tissue-Resident Memory T-Cells

  2021 SSRN Electronic Journal preprint Medicine Cancer Immunotherapy and Biomarkers Open access

  9

  citations
• Targeted Co-delivery of Tumor Antigen and α-Galactosylceramide to CD141+ Dendritic Cells Induces a Potent Tumor Antigen-Specific Human CD8+ T Cell Response in Human Immune System Mice

  2020 Frontiers in Immunology article Immunology and Microbiology Immunotherapy and Immune Responses Open access

  27

  citations
• The Ratiometric Transcript Signature MX2/GPR183 Is Consistently Associated With RTS,S-Mediated Protection Against Controlled Human Malaria Infection

  2020 Frontiers in Immunology article Medicine Malaria Research and Control Open access cited by 2 patents

  14

  citations

12 results