October 25, 2019 article Bridge: A Graph-Based Algorithm to Analyze Dynamic H-Bond Networks in Membrane Proteins Journal of Chemical Theory and Computation DOI: 10.1021/acs.jctc.9b00697 OpenAlex Authors 0 Author list not loaded yet. Cited by 9 stored of 66 Search Sort Most cited Newest Oldest Patent citations Title Any typearticle review book-chapter conference-paper preprint dissertation book dataset other Any fieldAgricultural and Biological Sciences Arts and Humanities Biochemistry, Genetics and Molecular Biology Business, Management and Accounting Chemical Engineering Chemistry Computer Science Decision Sciences Dentistry Earth and Planetary Sciences Economics, Econometrics and Finance Energy Engineering Environmental Science Health Professions Immunology and Microbiology Materials Science Mathematics Medicine Neuroscience Nursing Pharmacology, Toxicology and Pharmaceutics Physics and Astronomy Psychology Social Sciences Veterinary Open access Decoding Cancer-Associated Mutations in DNA Polymerase η through Atomistic Simulations 2026 Journal of Chemical Theory and Computation article Biochemistry, Genetics and Molecular Biology DNA Repair Mechanisms Open access 0 citations pH-dependent structural dynamics of neuropeptide Y in aqueous solution 2026 PLoS ONE article Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access 0 citations DNET: A Graph-Based Tool and Workflow for Dynamic Hydrogen-Bond Networks and Applications for Visual Rhodopsins 2026 Journal of Chemical Theory and Computation article Biochemistry, Genetics and Molecular Biology Receptor Mechanisms and Signaling 2 citations Insights on the effect of extracellular acidification on an HCN channel: a molecular dynamics study 2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Ion channel regulation and function Open access 0 citations pH-dependent structural dynamics of the neuropeptide Y in aqueous solution 2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access 0 citations Hydrogen-Bonding and Hydrophobic Interaction Networks as Structural Determinants of Microbial Rhodopsin Function 2024 The Journal of Physical Chemistry B article Neuroscience Photoreceptor and optogenetics research 8 citations Graph‐based algorithms to dissect long‐distance water‐mediated H‐bond networks for conformational couplings in GPCRs 2024 British Journal of Pharmacology article Biochemistry, Genetics and Molecular Biology Receptor Mechanisms and Signaling Open access 14 citations Structures of channelrhodopsin paralogs in peptidiscs explain their contrasting K+ and Na+ selectivities 2023 Nature Communications article Neuroscience Photoreceptor and optogenetics research Open access 32 citations Graphs of protein-water hydrogen bond networks to dissect structural movies of ion-transfer microbial rhodopsins 2023 Frontiers in Chemistry article Neuroscience Photoreceptor and optogenetics research Open access 7 citations 9 results References 0