lionessR: single sample network inference in R

• Intracellular proteomics and extracellular vesiculomics as a metric of disease recapitulation in 3D-bioprinted aortic valve arrays

  2024 Science Advances article Engineering 3D Printing in Biomedical Research Open access

  31

  citations
• Adjustment of spurious correlations in co-expression measurements from RNA-Sequencing data

  2023 Bioinformatics article Biochemistry, Genetics and Molecular Biology Gene expression and cancer classification Open access

  12

  citations
• Capturing the dynamics of microbial interactions through individual-specific networks

  2023 Frontiers in Microbiology article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access

  13

  citations
• Edge and modular significance assessment in individual-specific networks

  2023 Scientific Reports article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access cited by 1 patent

  3

  citations
• The Network Zoo: a multilingual package for the inference and analysis of gene regulatory networks

  2023 Genome biology article Biochemistry, Genetics and Molecular Biology Gene Regulatory Network Analysis Open access

  56

  citations
• Capturing the dynamics of microbiomes using individual-specific networks

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access

  0

  citations
• Reconstructing Sample-Specific Networks using LIONESS

  2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  3

  citations

7 results