Integrating single-cell transcriptomic data across different conditions, technologies, and species

Nature Biotechnology

DOI: 10.1038/nbt.4096 Full text (OA) OpenAlex

Authors 0

Author list not loaded yet.

Cited by 133 stored of 15,177

Kirigami electronics for long-term electrophysiological recording of human neural organoids and assembloids
2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Neuroscience and Neural Engineering Open access cited by 1 patent

13

citations
High-dimensional analysis reveals an immune atlas and novel neutrophil clusters in the lungs of model animals with Actinobacillus pleuropneumoniae-induced pneumonia
2023 Veterinary Research article Immunology and Microbiology Inflammation biomarkers and pathways Open access

7

citations
Scalable production of tissue-like vascularized liver organoids from human PSCs
2023 Experimental & Molecular Medicine article Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access cited by 5 patents

120

citations
Collaborative network analysis for the interpretation of transcriptomics data in rare diseases, an application to Huntington’s disease
2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

0

citations
Donor tissue-resident memory-like T and NK cells generate a transient peripheral chimerism in lung transplant recipients, potentially protective from chronic lung allograft dysfunction
2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Transplantation: Methods and Outcomes Open access

1

citations
Sublethal necroptosis signaling promotes inflammation and liver cancer
2023 Immunity article Biochemistry, Genetics and Molecular Biology Cell death mechanisms and regulation Open access

147

citations
Modelling Human Post-Implantation Development via Extra-Embryonic Niche Engineering
2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access

18

citations
A previously uncharacterized Factor Associated with Metabolism and Energy (FAME/C14orf105/CCDC198/1700011H14Rik) is related to evolutionary adaptation, energy balance, and kidney physiology
2023 Nature Communications article Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access

7

citations
MASIv2 enables standardization and integration of multi-modal single-cell and spatial omics data with one general framework
2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

1

citations
M cell maturation and cDC activation determine the onset of adaptive immune priming in the neonatal Peyer’s patch
2023 Immunity article Immunology and Microbiology Immunotherapy and Immune Responses Open access

55

citations
A single-cell view on host immune transcriptional response to in vivo BCG-induced trained immunity
2023 Cell Reports article Immunology and Microbiology Immune responses and vaccinations Open access

62

citations
Defining cardiac functional recovery in end-stage heart failure at single-cell resolution
2023 Nature Cardiovascular Research article Medicine Cardiac Fibrosis and Remodeling Open access

79

citations
Multi-omic analyses in immune cell development with lessons learned from T cell development
2023 Frontiers in Cell and Developmental Biology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

9

citations
Best practices for single-cell analysis across modalities
2023 Nature Reviews Genetics review Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 7 patents

1,043

citations
IL-6 in the infarcted heart is preferentially formed by fibroblasts and modulated by purinergic signaling
2023 Journal of Clinical Investigation article Medicine Cardiac Fibrosis and Remodeling Open access

66

citations
Pseudotime dynamics of T cells in pancreatic ductal adenocarcinoma inform distinct functional states within the regulatory and cytotoxic T cells
2023 iScience article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

12

citations
Atherosclerotic plaque epigenetic age acceleration is characterized by mesenchymal reprogramming and poor prognosis
2023 medRxiv preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access

1

citations
OX40 agonism enhances PD-L1 checkpoint blockade by shifting the cytotoxic T cell differentiation spectrum
2023 Cell Reports Medicine article Medicine Cancer Immunotherapy and Biomarkers Open access

22

citations
Single-cell T cell receptor sequencing of paired human atherosclerotic plaques and blood reveals autoimmune-like features of expanded effector T cells
2023 Nature Cardiovascular Research article Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access

96

citations
Intrathymic dendritic cell-biased precursors promote human T cell lineage specification through IRF8-driven transmembrane TNF
2023 Nature Immunology article Immunology and Microbiology T-cell and B-cell Immunology Open access

21

citations

Cited by imported patents 1 (EPO, DOI in their cited literature)

SYSTEM FOR DELETING REGIONS OF DNA
2025 EP4784750A1 +1 publications Chemistry & metallurgy

2

offices

Integrating single-cell transcriptomic data across different conditions, technologies, and species

Authors 0

Cited by 133 stored of 15,177

Cited by imported patents 1 (EPO, DOI in their cited literature)

References 0