BioContainers: an open-source and community-driven framework for software standardization

• Capturing the spatial structure of the benthic microbiome under an intensive aquaculture scenario in Chilean Patagonia

  2025 BMC Microbiology article Environmental Science Microbial Community Ecology and Physiology Open access

  0

  citations
• Sequali: efficient and comprehensive quality control of short- and long-read sequencing data

  2024 Bioinformatics Advances article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access

  2

  citations
• The ELIXIR Biodiversity Community: Understanding short- and long-term changes in biodiversity

  2024 F1000Research article Computer Science Research Data Management Practices Open access

  4

  citations
• WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows

  2023 Journal of Proteome Research article Chemistry Advanced Proteomics Techniques and Applications Open access

  4

  citations
• WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Chemistry Advanced Proteomics Techniques and Applications Open access

  2

  citations
• Community-developed checklists for publishing images and image analyses

  2023 Nature Methods article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access

  94

  citations
• The ELIXIR Biodiversity Community: Understanding short- and long-term changes in biodiversity

  2023 F1000Research article Computer Science Research Data Management Practices Open access

  3

  citations
• An evaluation of EDAM coverage in the Tools Ecosystem and prototype integration of Galaxy and WorkflowHub systems

  2023 preprint Decision Sciences Scientific Computing and Data Management Open access

  2

  citations
• Systems Biology in ELIXIR: modelling in the spotlight

  2022 F1000Research article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  10

  citations
• Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR

  2022 F1000Research article Computer Science Research Data Management Practices Open access

  2

  citations
• Community-driven ELIXIR activities in single-cell omics

  2022 F1000Research article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  11

  citations
• Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR

  2021 F1000Research article Computer Science Research Data Management Practices Open access

  5

  citations

12 results