Why Batch Effects Matter in Omics Data, and How to Avoid Them

• A Guide to Bayesian Optimization in Bioprocess Engineering

  2026 Biotechnology and Bioengineering article Decision Sciences Optimal Experimental Design Methods Open access

  14

  citations
• The impact of site-specific digital histology signatures on deep learning model accuracy and bias

  2021 Nature Communications article Computer Science AI in cancer detection Open access

  320

  citations
• Predicting genotoxicity of viral vectors for stem cell gene therapy using gene expression-based machine learning

  2021 Molecular Therapy article Biochemistry, Genetics and Molecular Biology Virus-based gene therapy research Open access cited by 1 patent

  51

  citations
• Omixer: multivariate and reproducible sample randomization to proactively counter batch effects in omics studies

  2021 Bioinformatics article Biochemistry, Genetics and Molecular Biology Gene expression and cancer classification Open access

  25

  citations
• Hidden Variables in Deep Learning Digital Pathology and Their Potential to Cause Batch Effects: Prediction Model Study

  2021 Journal of Medical Internet Research article Computer Science AI in cancer detection Open access

  64

  citations
• The Impact of Digital Histopathology Batch Effect on Deep Learning Model Accuracy and Bias

  2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science AI in cancer detection Open access

  25

  citations
• Hidden Variables in Deep Learning Digital Pathology and Their Potential to Cause Batch Effects: Prediction Model Study (Preprint)

  2020 preprint Computer Science AI in cancer detection Open access

  0

  citations

7 results