A cell-centered approach to developmental biology

• Falsifying computational models of endothelial cell network formation through quantitative comparison with in vitro models

  2025 PLoS Computational Biology article Mathematics Mathematical Biology Tumor Growth Open access

  3

  citations
• Falsifying computational models of endothelial cell network formation through quantitative comparison with in vitro models

  2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Mathematics Mathematical Biology Tumor Growth Open access

  0

  citations
• Enhanced cell wall mechanics in VirtualLeaf enable realistic simulations of plant tissue dynamics

  2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Polysaccharides and Plant Cell Walls Open access

  0

  citations
• In silico model suggests that interdigitation promotes robust activation of atrial cells by pacemaker cells

  2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Cardiac electrophysiology and arrhythmias Open access

  1

  citations
• The shapes of elongating gastruloids are consistent with convergent extension driven by a combination of active cell crawling and differential adhesion

  2024 PLoS Computational Biology article Biochemistry, Genetics and Molecular Biology Developmental Biology and Gene Regulation Open access

  24

  citations
• A combination of convergent extension and differential adhesion explains the shapes of elongating gastruloids

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Developmental Biology and Gene Regulation Open access

  2

  citations
• Hybrid cellular Potts and bead-spring modeling of cells in fibrous extracellular matrix

  2023 Biophysical Journal article Biochemistry, Genetics and Molecular Biology Cellular Mechanics and Interactions Open access

  29

  citations
• Computational modeling of cambium activity provides a regulatory framework for simulating radial plant growth

  2023 eLife article Agricultural and Biological Sciences Plant Molecular Biology Research Open access

  17

  citations
• Modelling the mechanical cross-talk between cells and fibrous extracellular matrix using hybrid cellular Potts and molecular dynamics methods

  2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cellular Mechanics and Interactions Open access

  1

  citations
• Implementing Computational Modeling in Tissue Engineering: Where Disciplines Meet

  2022 Tissue Engineering Part A article Medicine Tissue Engineering and Regenerative Medicine Open access

  35

  citations
• Spatiotemporal image generation for embryomics applications

  2022 Elsevier eBooks book-chapter Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques

  0

  citations
• Modeling Plant Tissue Development Using VirtualLeaf

  2021 Methods in molecular biology book-chapter Agricultural and Biological Sciences Greenhouse Technology and Climate Control Open access

  4

  citations
• Computational modelling of cambium activity provides a regulatory framework for simulating radial plant growth

  2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant Molecular Biology Research Open access

  3

  citations

13 results