Modeling sample variables with an Experimental Factor Ontology

• Effector–host interactome map links type III secretion systems in healthy gut microbiomes to immune modulation

  2026 Nature Microbiology article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access

  4

  citations
• Assembly and reasoning over semantic mappings at scale for biomedical data integration

  2025 Bioinformatics article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access

  1

  citations
• A multi-omics data analysis workflow packaged as a FAIR Digital Object

  2024 GigaScience article Decision Sciences Scientific Computing and Data Management Open access

  14

  citations
• FAIR High Content Screening in Bioimaging

  2023 Scientific Data data-paper Computer Science Research Data Management Practices Open access

  10

  citations
• A Multi-omics Data Analysis Workflow Packaged as a FAIR Digital Object

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Decision Sciences Scientific Computing and Data Management Open access

  1

  citations
• Applying the FAIR principles to data in a hospital: challenges and opportunities in a pandemic

  2022 Journal of Biomedical Semantics article Computer Science Research Data Management Practices Open access

  67

  citations
• Modeling quantitative traits for COVID-19 case reports

  2020 medRxiv preprint Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access

  3

  citations
• BioHackathon 2015: Semantics of data for life sciences and reproducible research

  2020 F1000Research article Computer Science Research Data Management Practices Open access

  6

  citations

8 results