The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery

• pyBiodatafuse: extending interoperability of data using modular queries across biomedical resources

  2026 Bioinformatics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  2

  citations
• Knowledge Representation of a Multicenter Adolescent and Young Adult Cancer Infrastructure: Development of the STRONG AYA Knowledge Graph

  2026 JCO Clinical Cancer Informatics article Computer Science Semantic Web and Ontologies Open access

  0

  citations
• The JARDIN Hackathon to Seek Solutions to Overcome Technical Barriers in Health Data Exchange: From the Point of Care to European Registry Networks

  2026 Data Science Journal article Health Professions Electronic Health Records Systems Open access

  0

  citations
• CMEO: a metadata-centric ontology for clinical studies exploration and harmonization assessment

  2025 BMC Medical Informatics and Decision Making article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access

  1

  citations
• RareLink: scalable REDCap-based framework for rare disease interoperability linking international registries to FHIR and Phenopackets

  2025 npj Genomic Medicine article Health Professions Electronic Health Records Systems Open access

  4

  citations
• ExeKGLib: A Platform for Machine Learning Analytics Based on Knowledge Graphs

  2025 Lecture notes in computer science conference-paper Decision Sciences Scientific Computing and Data Management

  0

  citations
• Knowledge representation of a multi-centre adolescent and young adult (AYA) cancer infrastructure; development of the STRONG AYA Knowledge Graph

  2025 medRxiv preprint Computer Science Semantic Web and Ontologies Open access

  0

  citations
• A multi-omics data analysis workflow packaged as a FAIR Digital Object

  2024 GigaScience article Decision Sciences Scientific Computing and Data Management Open access

  14

  citations
• Better Together – Empowering Citizen Collectives with Community Learning

  2024 Communications in computer and information science conference-paper Engineering Smart Cities and Technologies Open access

  1

  citations
• The use of foundational ontologies in biomedical research

  2023 Journal of Biomedical Semantics article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access

  24

  citations
• A Multi-omics Data Analysis Workflow Packaged as a FAIR Digital Object

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Decision Sciences Scientific Computing and Data Management Open access

  1

  citations
• OPTION: OPTImization Algorithm Benchmarking ONtology

  2022 IEEE Transactions on Evolutionary Computation article Computer Science Semantic Web and Ontologies Open access

  7

  citations
• The FAIR Data Point: Interfaces and Tooling

  2022 Data Intelligence article Computer Science Research Data Management Practices Open access

  10

  citations
• The use of Foundational Ontologies in Bioinformatics

  2022 Research Square preprint Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access

  1

  citations
• FAIR Genomes metadata schema promoting Next Generation Sequencing data reuse in Dutch healthcare and research

  2022 Scientific Data data-paper Computer Science Research Data Management Practices Open access

  32

  citations
• Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data

  2022 Journal of Biomedical Semantics article Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access

  48

  citations
• Semantic modelling of Common Data Elements for Rare Disease registries, and a prototype workflow for their deployment over registry data

  2021 medRxiv preprint Biochemistry, Genetics and Molecular Biology Biomedical Text Mining and Ontologies Open access

  9

  citations
• BioHackathon 2015: Semantics of data for life sciences and reproducible research

  2020 F1000Research article Computer Science Research Data Management Practices Open access

  6

  citations

18 results