Pathview: an R/Bioconductor package for pathway-based data integration and visualization

• Proteome and Secretome Profiling of the Melanoma-Induced Transition Toward Immune Incompetent Dendritic Cells Reveals Enhanced IDO1, Cathepsin, and Legumain Activity

  2025 Molecular & Cellular Proteomics article Immunology and Microbiology Immunotherapy and Immune Responses Open access

  2

  citations
• Pulmonary miRNA expression after polytrauma depends on the surgical invasiveness and displays an anti-inflammatory pattern by the combined inhibition of C5 and CD14

  2024 Frontiers in Immunology article Medicine Trauma Management and Diagnosis Open access

  5

  citations
• Neutrophil degranulation, NETosis and platelet degranulation pathway genes are co-induced in whole blood up to six months before tuberculosis diagnosis

  2022 PLoS ONE article Medicine Tuberculosis Research and Epidemiology Open access

  16

  citations
• Neutrophil degranulation, NETosis and platelet degranulation pathway genes are co-induced in whole blood up to six months before tuberculosis diagnosis

  2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Tuberculosis Research and Epidemiology Open access

  3

  citations
• SciViewer- An interactive browser for visualizing single cell datasets

  2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  1

  citations
• Metabolic alterations in meningioma reflect the clinical course

  2021 BMC Cancer article Medicine Meningioma and schwannoma management Open access

  19

  citations
• Comparing in vitro human liver models to in vivo human liver using RNA-Seq

  2020 Archives of Toxicology article Pharmacology, Toxicology and Pharmaceutics Drug-Induced Hepatotoxicity and Protection Open access cited by 1 patent

  100

  citations
• Metabolic Alterations in Meningioma Reflect Clinical Course

  2020 Research Square preprint Medicine Meningioma and schwannoma management Open access

  0

  citations
• DNA Methyltransferase 1 (DNMT1) Function Is Implicated in the Age-Related Loss of Cortical Interneurons

  2020 Frontiers in Cell and Developmental Biology article Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access

  37

  citations
• Deficiency in the autophagy modulator Dram1 exacerbates pyroptotic cell death of Mycobacteria-infected macrophages

  2020 Cell Death and Disease article Medicine Tuberculosis Research and Epidemiology Open access

  49

  citations
• Single-Cell RNA Sequencing Maps Endothelial Metabolic Plasticity in Pathological Angiogenesis

  2020 Cell Metabolism article Biochemistry, Genetics and Molecular Biology Angiogenesis and VEGF in Cancer Open access

  307

  citations
• DNA methyltransferase 1 (DNMT1) function is implicated in the age-related loss of cortical interneurons

  2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access

  2

  citations
• BioHackathon 2015: Semantics of data for life sciences and reproducible research

  2020 F1000Research article Computer Science Research Data Management Practices Open access

  6

  citations
• DNA Methylation-Mediated Modulation of Endocytosis as Potential Mechanism for Synaptic Function Regulation in Murine Inhibitory Cortical Interneurons

  2020 Cerebral Cortex article Neuroscience Neuroscience and Neuropharmacology Research Open access

  43

  citations

14 results